PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71418.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 373aa MW: 40198.4 Da PI: 4.4798 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.9e-17 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ +r g+ R++k+c++rw +yl MLOC_71418.2 43 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 90 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.5e-15 | 96 | 141 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ ++++ +lG++ W++Ia++++ gRt++++k+ w+++l MLOC_71418.2 96 RGNFTADEEATVIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 141 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 34 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.211 | 38 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-29 | 40 | 137 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-12 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-15 | 43 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.35E-10 | 45 | 90 | No hit | No description |
PROSITE profile | PS51294 | 23.727 | 91 | 145 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 94 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-13 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-13 | 96 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.73E-10 | 98 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MLPTASWTRP NRARTSEQTA EWSRAADMGR GRAPCCAKVG LNRGSWTPQE DMRLIAYIQK 60 HGHANWRALP RQAGLLRCGK SCRLRWINYL RPDLRRGNFT ADEEATVIKL HGLLGNKWSK 120 IAACLPGRTD NEIKNVWNTH LKKKASEQKP GPGVGQSKGE AADGDPDTPV PSLSSASSSM 180 TTSEGSNGGG AGEQCGTSNE PDTTDLPSPL ELELELEPVM DILDMLADAA PTEALATAAP 240 MPTSSCSSSS PTTCGGGAEE LLELPDYIDM DADIWSIIDD DTARLQQQQG DATVPCRSTT 300 KASPEEEGTD WWLEDLEKEL GLWGPAGESQ PQVGPHDQIG YPGQLYETEG DVAMGPSSYP 360 QSRSDHHQAS SSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 41 | 145 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71418.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111933 | 1e-125 | AK111933.1 Oryza sativa Japonica Group cDNA clone:001-017-B10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189024.1 | 1e-170 | myb-related protein Zm1-like | ||||
Swissprot | P20024 | 1e-115 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A287UI13 | 0.0 | A0A287UI13_HORVV; Uncharacterized protein | ||||
STRING | MLOC_71418.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-65 | myb domain protein 63 |
Publications ? help Back to Top | |||
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