PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71418.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 373aa    MW: 40198.4 Da    PI: 4.4798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71418.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-174390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT++Ed +l+ +++++G  +W++ +r  g+ R++k+c++rw +yl
     MLOC_71418.2 43 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 90
                     89******************************99************97 PP

2Myb_DNA-binding46.96.5e-1596141148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+   ++++ +lG++ W++Ia++++ gRt++++k+ w+++l
     MLOC_71418.2  96 RGNFTADEEATVIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 141
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-223493IPR009057Homeodomain-like
PROSITE profilePS5129414.2113890IPR017930Myb domain
SuperFamilySSF466898.24E-2940137IPR009057Homeodomain-like
SMARTSM007171.4E-124292IPR001005SANT/Myb domain
PfamPF002498.4E-154390IPR001005SANT/Myb domain
CDDcd001674.35E-104590No hitNo description
PROSITE profilePS5129423.72791145IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2494144IPR009057Homeodomain-like
SMARTSM007179.7E-1395143IPR001005SANT/Myb domain
PfamPF002492.6E-1396141IPR001005SANT/Myb domain
CDDcd001678.73E-1098141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLPTASWTRP NRARTSEQTA EWSRAADMGR GRAPCCAKVG LNRGSWTPQE DMRLIAYIQK  60
HGHANWRALP RQAGLLRCGK SCRLRWINYL RPDLRRGNFT ADEEATVIKL HGLLGNKWSK  120
IAACLPGRTD NEIKNVWNTH LKKKASEQKP GPGVGQSKGE AADGDPDTPV PSLSSASSSM  180
TTSEGSNGGG AGEQCGTSNE PDTTDLPSPL ELELELEPVM DILDMLADAA PTEALATAAP  240
MPTSSCSSSS PTTCGGGAEE LLELPDYIDM DADIWSIIDD DTARLQQQQG DATVPCRSTT  300
KASPEEEGTD WWLEDLEKEL GLWGPAGESQ PQVGPHDQIG YPGQLYETEG DVAMGPSSYP  360
QSRSDHHQAS SSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-244114525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71418.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119331e-125AK111933.1 Oryza sativa Japonica Group cDNA clone:001-017-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189024.11e-170myb-related protein Zm1-like
SwissprotP200241e-115MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A287UI130.0A0A287UI13_HORVV; Uncharacterized protein
STRINGMLOC_71418.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-65myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]