PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71395.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 244aa MW: 27536.3 Da PI: 7.6112 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 141 | 231 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f k +++s+v + +l lp +f++++ k ++ t+tl de+ +++e k+ ++++ l++GW +F+ ++ +++gD+ vF+l++ ++f +v+++ MLOC_71395.2 141 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPTTF--KVHII 229 8999********************99533..4459***************..555555..9***********************986777..99999 PP -S CS B3 98 rk 99 r+ MLOC_71395.2 230 RA 231 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-19 | 132 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-22 | 134 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.34E-25 | 139 | 230 | No hit | No description |
SMART | SM01019 | 2.9E-16 | 141 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.406 | 141 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-15 | 141 | 231 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAVEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAT CAPKTPSPMK HKRRRIIYAA 60 TPVPSPPRRS RRLAHLPEVK YADACAEVGE ESERVGRWSP RRRSGSIYLA AGGPISMKAR 120 MEAASKAEEL ESQLDPEFPS FMKRMLHSHV VRGFWLGLPS HFCDTYLPKN DCTITLVDEK 180 DEEFESKYLA YKKGLSGGWA GFALDHVIRD GDSTVFQLIK PTTFKVHIIR ATVGDDDDEE 240 EEAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 55 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71395.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249804 | 0.0 | AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149937.1 | 1e-167 | B3 domain-containing protein Os03g0184500-like | ||||
Swissprot | Q10QS9 | 1e-124 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A446SEX4 | 1e-170 | A0A446SEX4_TRITD; Uncharacterized protein | ||||
STRING | MLOC_71395.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-47 | B3 family protein |
Publications ? help Back to Top | |||
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