PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71332.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 439aa    MW: 47183.1 Da    PI: 4.2855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71332.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-082262046
                     TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46
                     G++ W++ a++++ gRt++++k++w++
     MLOC_71332.1  2 GNK-WARMAAHLP-GRTDNEIKNYWNT 26
                     899.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-13129IPR009057Homeodomain-like
PROSITE profilePS5129415.289132IPR017930Myb domain
PfamPF002491.5E-6226IPR001005SANT/Myb domain
SuperFamilySSF466893.1E-6231IPR009057Homeodomain-like
CDDcd001678.68E-6326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGNKWARMAA HLPGRTDNEI KNYWNTRIKR CQRAGLPIYP ASVCNQSSNE DQQGSSDFNC  60
GENLSSDLLN GNGLYLPDFT CDNFIANSEA LSYAPQLSAV SISSLLGQSF ASKNCGFMDQ  120
VNQAGMLKQS DPLLPGLSDT INGALSSVDQ FSNDSEKLKQ ALGFDYLHEA NSSSKIIAPF  180
GGALTGSHAF LNGTFSTSRT INGPLKMELP SLQDTESDPN SWLKYTVAPA MQPTELVDPY  240
LQSPTATPSV KSECASPRNS GLLEELLHEA QGLRSGKNQQ LSVRSSSSSV STPCDTTVVS  300
PEFDLCQEYW EERLNEYAPF SGNSLTGSTA PMSAASPDVF QLSKISPAQS PSLGSGEQAM  360
EPAYEPGAGD TSSHPENLRP DAFFSGNTAD SSVFNNAIAM LLGNDMNTEC KPVFGDGIMF  420
DTSVWSNLPH ACQMSEEFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00637SELEX26531826Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71332.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517260.0AK251726.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf127g19, mRNA sequence.
GenBankX876900.0X87690.1 H.vulgare mRNA for GAMyb protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163715.10.0transcription factor GAMYB
RefseqXP_020163716.10.0transcription factor GAMYB
SwissprotA2WW870.0GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A287LUP40.0A0A287LUP4_HORVV; Transcription factor
TrEMBLA0A287LUQ00.0A0A287LUQ0_HORVV; Uncharacterized protein
TrEMBLQ964640.0Q96464_HORVU; Transcription factor
STRINGMLOC_71332.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.12e-30myb domain protein 33