PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71193.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GeBP | ||||||||
Protein Properties | Length: 265aa MW: 29053.6 Da PI: 8.8967 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 54.3 | 3.8e-17 | 61 | 149 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +q+lw++ Dei+lL G i+f+a+ g p d++++y+ +++s+s+++++ + K++rLK Kf + s++h++ + ls +Wg MLOC_71193.1 61 AQKLWTDADEIALLNGAISFRARYGIAPRLpDVEGLYNSLRDSLSSHINQAKVYYKLKRLKSKFCNTALP-------PTSTPHERRVRALSADLWG 149 79************************98877*********************************988766.......7788999999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.6E-16 | 62 | 149 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
GDRRRSPNPN PRPRADYYGS EPSRKSERKR KPRSFPDSAF LSQAITVPAS SSGGLGGHGA 60 AQKLWTDADE IALLNGAISF RARYGIAPRL PDVEGLYNSL RDSLSSHINQ AKVYYKLKRL 120 KSKFCNTALP PTSTPHERRV RALSADLWGT EVAPSAEDLP EAEEPEEEDA DEGYTGADVA 180 VAVSVSARLP LVSELLGEYW RRNGRAMSGV SLEKGLGLLG AEEGNVAETR WRKQLDAEMR 240 TQLRRHDLAK EVFGLLSDTI KGLGP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71193.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374142 | 0.0 | AK374142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055K08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180064.1 | 1e-149 | probable transcription factor At1g66420 | ||||
TrEMBL | A0A287W0Q2 | 0.0 | A0A287W0Q2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_71193.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2682 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01370.1 | 2e-10 | DNA-binding storekeeper protein-related transcriptional regulator |