PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71066.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 170aa MW: 18356.7 Da PI: 10.444 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 5.2e-12 | 2 | 33 | 14 | 47 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 a++ +G++ W++Iar ++ gRt++ +k++w+ + MLOC_71066.2 2 AAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 33 599******.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.881 | 1 | 38 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-12 | 2 | 31 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.50E-7 | 2 | 34 | No hit | No description |
SuperFamily | SSF46689 | 9.36E-10 | 3 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-9 | 3 | 33 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MAAHRAYGNK WALIARLFPG RTDNAVKNHW HVLMARRQRE QSGAFRRRSK PASSSSSSIA 60 PAPHYPAVVL QHQHQHQYQL HGHGASPMPL QPFAMGVAIA SGVYSKPATA SRAYSGGESD 120 ESASTCTTDL SLSSGSAAVP CFYHHHHHQG TCLTACLPSR LKSQAPSPKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71066.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK377172 | 0.0 | AK377172.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150O19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187176.1 | 4e-78 | transcriptional activator Myb-like | ||||
Swissprot | Q5NBM8 | 2e-34 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A287KTG3 | 1e-103 | A0A287KTG3_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287KTH2 | 1e-104 | A0A287KTH2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_71066.1 | 5e-77 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 1e-21 | myb domain protein 56 |