PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_70929.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28661.5 Da PI: 10.9896 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.5 | 1.1e-52 | 30 | 158 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lppGfrFhPtd+elvv+yL++kv+g++ ++ +i+evd+yk++PwdLp+++ +++ewyfF++rd+ky++g+r+nr++ +gyWkatg dk+v + MLOC_70929.3 30 LPPGFRFHPTDDELVVHYLCRKVAGQPQPV-PIIAEVDLYKFNPWDLPERALFGSREWYFFTPRDRKYPNGSRPNRSAGTGYWKATGADKPVAPRes 125 79*************************999.88***************8777899*************************************99877 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++vg+kk Lvfy+grap+g+ktdW+mheyr+ MLOC_70929.3 126 GGRTVGIKKALVFYSGRAPRGVKTDWIMHEYRI 158 8999***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-60 | 26 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.804 | 30 | 206 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-27 | 31 | 158 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MMTAMVKAEA MTAEAEGSSG RRDAEAELNL PPGFRFHPTD DELVVHYLCR KVAGQPQPVP 60 IIAEVDLYKF NPWDLPERAL FGSREWYFFT PRDRKYPNGS RPNRSAGTGY WKATGADKPV 120 APRESGGRTV GIKKALVFYS GRAPRGVKTD WIMHEYRIAQ ADRTPGKKGS LKSWTNGCCA 180 GCTTRRTTGT RSRWSRTWLW CRDRMGRSWT RWPPTPCPTA SRRTTPRRST TPPACSSSTT 240 ASWTWRSGRP GKAW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-86 | 17 | 158 | 2 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_70929.3 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK364958 | 0.0 | AK364958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2029L14. | |||
GenBank | AM500853 | 0.0 | AM500853.1 Hordeum vulgare subsp. vulgare mRNA for putative NAC transcription factor (nac4 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181126.1 | 1e-109 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 9e-96 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A287LVL1 | 1e-122 | A0A287LVL1_HORVV; Uncharacterized protein | ||||
TrEMBL | F2DM40 | 1e-123 | F2DM40_HORVV; Predicted protein | ||||
STRING | MLOC_70929.1 | 1e-124 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63790.1 | 3e-74 | NAC domain containing protein 102 |