PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70827.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 616aa    MW: 71410.1 Da    PI: 7.7054
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70827.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1842.4e-2635122191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fYn+YA +vGFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ eHnH+lap
  MLOC_70827.3  35 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLAP 122
                   6*********************6666.899*************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-2335122IPR004330FAR1 DNA binding domain
PfamPF105511.2E-26245339IPR018289MULE transposase domain
PfamPF044341.3E-6521559IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.99524560IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-5535562IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MRRMIEAEPP IDEASLAKLV PEVDMEFESE EKAYEFYNKY AGHVGFSVRK STSHKSSENI  60
TKVRTFVCSR EGYNRDKKSL EAKKPRLDTR IGCPARLIIK VTPECKYRVT DFKAEHNHQL  120
APPSTMHMLR SQRILTELQS GEAELSDDSV VTPTTKATGD LVVRQVGFLR SISLLPADYK  180
NYLRSKRTKA MQPGDGGAIL KYLQTMQMDN PSFFYTMQID EDDKLTNFFW TDPKSRDDFN  240
YFNDVLCLDT TYKINGYGRP LALFLGVNHH RQTIIFGAAM LYDESFESYK WLFESFKIAM  300
HGKQPAVALI DQSIQLSSAM AAAWPNTTQR VCAWHVYQNS VKHLNQVFQG SKTFAKDFSK  360
CVFGYEEEEE YVFAWRSMLE KYDLRHNEWL SKLFDERERW ALAYDRHIFC ADMISSLQTE  420
SFSSILKKFL SPQLDLLSFF KHYERAVDEH RYAELQADFQ ASQSYPRIPP AKMLKQTSHT  480
YTPVVFEIFR KEFELFMDSV LFCCGEAGTT SDYKVAPSEK PKEHFVRFDS SDNSCMCTCR  540
KFEFMGVPCC HMLKVLDYRN IKELPQIYLL KRWRRTAKST DEDNQGHAAN DNRSSLNVSI  600
PSANHHGLQS NNARIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70827.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583410.0AK358341.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074F13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175511.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453B3E10.0A0A453B3E1_AEGTS; Uncharacterized protein
STRINGMLOC_70827.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5