PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70827.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 775aa    MW: 88608.5 Da    PI: 7.589
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70827.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.15.6e-14108144135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  MLOC_70827.2 108 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 144
                   5667777777************************876 PP
2FAR183.53.4e-26178265191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fYn+YA +vGFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+gC a+l +k + + k++vt+++ eHnH+lap
  MLOC_70827.2 178 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQLAP 265
                   6*********************6666.899*************9988..99*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.38E-10103154No hitNo description
SMARTSM004016.5E-6104157IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-11107146IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.30E-7107145No hitNo description
PfamPF003201.4E-11108143IPR000679Zinc finger, GATA-type
PfamPF031011.8E-23178265IPR004330FAR1 DNA binding domain
PfamPF105511.7E-26388482IPR018289MULE transposase domain
PfamPF044341.7E-6664702IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.99667703IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-5678705IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MRPHEATYRA GASDPITPSP SPPPLICLAP NPSSDSHKQR GFQKFLRDFV PDHSPVLLKG  60
GDAMMHMLVA SDGGGGEMHP YAIVPAEQEL ELHRDNAADD SLDGHVRCLR CGISGNATPH  120
MRRGPDGPRT LCNACGIAYR KGKMRRMIEA EPPIDEASLA KLVPEVDMEF ESEEKAYEFY  180
NKYAGHVGFS VRKSTSHKSS ENITKVRTFV CSREGYNRDK KSLEAKKPRL DTRIGCPARL  240
IIKVTPECKY RVTDFKAEHN HQLAPPSTMH MLRSQRILTE LQSGEAELSD DSVVTPTTKA  300
TGDLVVRQVG FLRSISLLPA DYKNYLRSKR TKAMQPGDGG AILKYLQTMQ MDNPSFFYTM  360
QIDEDDKLTN FFWTDPKSRD DFNYFNDVLC LDTTYKINGY GRPLALFLGV NHHRQTIIFG  420
AAMLYDESFE SYKWLFESFK IAMHGKQPAV ALIDQSIQLS SAMAAAWPNT TQRVCAWHVY  480
QNSVKHLNQV FQGSKTFAKD FSKCVFGYEE EEEYVFAWRS MLEKYDLRHN EWLSKLFDER  540
ERWALAYDRH IFCADMISSL QTESFSSILK KFLSPQLDLL SFFKHYERAV DEHRYAELQA  600
DFQASQSYPR IPPAKMLKQT SHTYTPVVFE IFRKEFELFM DSVLFCCGEA GTTSDYKVAP  660
SEKPKEHFVR FDSSDNSCMC TCRKFEFMGV PCCHMLKVLD YRNIKELPQI YLLKRWRRTA  720
KSTDEDNQGH AANDNRSSLN VSIPSANHHG LQSNNARIQD TSLSNMHENP FHRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70827.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583410.0AK358341.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074F13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175511.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453B3E00.0A0A453B3E0_AEGTS; Uncharacterized protein
STRINGMLOC_70827.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-115FAR1-related sequence 5