PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_70659.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 33170.9 Da PI: 6.7941 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 34 | 78 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+W++ E +l+ +a ++ + +W+++a+ ++ g+t ++ ++ MLOC_70659.2 34 GAWSPAENKLFEEALARVDCDapdRWERVASLLP-GKTVADVMTHY 78 79*****************99*************.********999 PP | |||||||
2 | Myb_DNA-binding | 45 | 2.5e-14 | 148 | 192 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + Rt+ q+ s+ qky MLOC_70659.2 148 PWTEEEHKLFLMGLKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 192 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.525 | 31 | 85 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 31 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-5 | 32 | 84 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.22E-9 | 34 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-6 | 34 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.43E-6 | 35 | 78 | No hit | No description |
PROSITE profile | PS51294 | 17.582 | 141 | 197 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-17 | 142 | 197 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-17 | 144 | 195 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 145 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 145 | 195 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-12 | 148 | 192 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-11 | 148 | 193 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMKQESWMEV LPVPPAPYFA GQAGGWFLQD QRGGAWSPAE NKLFEEALAR VDCDAPDRWE 60 RVASLLPGKT VADVMTHYDD LENDVCFIEA GLVPFPHYNA NAGSPASGFT LDWDGGGDLA 120 FKRSCYMVGG NGGKRGRGSE QERKKGVPWT EEEHKLFLMG LKKYGRGDWR NISRNYVTSR 180 TPTQVASHAQ KYFIRLNSGG KDKRRSSIHD ITTVNIPDDD HASNSNPSPS PPSAVTASST 240 HSSEQFGVLV DSKPHPLGHH FTPHLYGSVK LEASSNGGYH GNGGRIDDAV LMQMQCGQLQ 300 PLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-15 | 33 | 104 | 8 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_70659.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365953 | 0.0 | AK365953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039F04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154949.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 6e-85 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | F2DPY5 | 0.0 | F2DPY5_HORVV; Predicted protein | ||||
STRING | MLOC_70659.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-79 | MYB family protein |
Publications ? help Back to Top | |||
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