PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70659.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 303aa    MW: 33170.9 Da    PI: 6.7941
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70659.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-073478244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+W++ E +l+ +a ++   +   +W+++a+ ++ g+t  ++  ++
     MLOC_70659.2 34 GAWSPAENKLFEEALARVDCDapdRWERVASLLP-GKTVADVMTHY 78
                     79*****************99*************.********999 PP

2Myb_DNA-binding452.5e-14148192347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r   + Rt+ q+ s+ qky
     MLOC_70659.2 148 PWTEEEHKLFLMGLKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 192
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.5253185IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.9E-43180IPR009057Homeodomain-like
SMARTSM007172.2E-53284IPR001005SANT/Myb domain
SuperFamilySSF466891.22E-93489IPR009057Homeodomain-like
PfamPF002491.8E-63478IPR001005SANT/Myb domain
CDDcd001676.43E-63578No hitNo description
PROSITE profilePS5129417.582141197IPR017930Myb domain
SuperFamilySSF466891.72E-17142197IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-17144195IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.4E-12145191IPR009057Homeodomain-like
SMARTSM007171.2E-12145195IPR001005SANT/Myb domain
PfamPF002499.3E-12148192IPR001005SANT/Myb domain
CDDcd001673.29E-11148193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMKQESWMEV LPVPPAPYFA GQAGGWFLQD QRGGAWSPAE NKLFEEALAR VDCDAPDRWE  60
RVASLLPGKT VADVMTHYDD LENDVCFIEA GLVPFPHYNA NAGSPASGFT LDWDGGGDLA  120
FKRSCYMVGG NGGKRGRGSE QERKKGVPWT EEEHKLFLMG LKKYGRGDWR NISRNYVTSR  180
TPTQVASHAQ KYFIRLNSGG KDKRRSSIHD ITTVNIPDDD HASNSNPSPS PPSAVTASST  240
HSSEQFGVLV DSKPHPLGHH FTPHLYGSVK LEASSNGGYH GNGGRIDDAV LMQMQCGQLQ  300
PLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1533104879RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70659.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659530.0AK365953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039F04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154949.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H76e-85DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLF2DPY50.0F2DPY5_HORVV; Predicted protein
STRINGMLOC_70659.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-79MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]