PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_70659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 155aa MW: 17094.1 Da PI: 4.6006 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.6e-08 | 34 | 78 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+W++ E +l+ +a ++ + +W+++a+ ++ g+t ++ ++ MLOC_70659.1 34 GAWSPAENKLFEEALARVDCDapdRWERVASLLP-GKTVADVMTHY 78 79*****************99*************.*********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.237 | 28 | 82 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-4 | 31 | 80 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-5 | 32 | 84 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.51E-10 | 34 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.7E-7 | 34 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.00E-6 | 35 | 78 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MMKQESWMEV LPVPPAPYFA GQAGGWFLQD QRGGAWSPAE NKLFEEALAR VDCDAPDRWE 60 RVASLLPGKT VADVMTHYDD LENDVCFIEA GLVPFPHYNA NAGSPASGFT LDWDGGGDLA 120 FKRSCYMVGG NGGKRGRGSE QERKKGVPWT EEEHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-17 | 33 | 104 | 8 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_70659.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365953 | 0.0 | AK365953.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039F04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154949.1 | 3e-97 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 6e-40 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | F2DPY5 | 1e-112 | F2DPY5_HORVV; Predicted protein | ||||
STRING | MLOC_70659.2 | 1e-112 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-38 | MYB family protein |
Publications ? help Back to Top | |||
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