PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70598.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 145aa    MW: 16049.8 Da    PI: 8.2708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70598.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000883757323
                  ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                  C +C++ F+++  L  H++ H
  MLOC_70598.1 37 CVHCDRKFRSSQALGGHQNAH 57
                  ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.17E-102678No hitNo description
PROSITE profilePS5015711.1363562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803759IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MEELHSGKDE QEQELSLDLT LRISSAAEAE QGGFFLCVHC DRKFRSSQAL GGHQNAHKHE  60
RSLAHRRREI AAATRAHVAP APKDERPRYG FLESSAGRPG RMEARTWNAA AAPLPRGNGT  120
ARMPAGRGSS EYDYRADDVD LSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70598.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9537756e-61EU953775.1 Zea mays clone 1445807 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186467.15e-54zinc finger protein 2-like
TrEMBLA0A287PWD81e-102A0A287PWD8_HORVV; Uncharacterized protein
STRINGMLOC_70598.11e-102(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-14C2H2 family protein