PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_70585.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 252aa MW: 26937.9 Da PI: 4.3018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_70585.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	228	249	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+k+F++ L +H + H MLOC_70585.2 228 CKSCTKTFNSEVALASHAKAkH 249 *****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.118	226	252	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	228	249	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009294	Biological Process	DNA mediated transformation
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010162	Biological Process	seed dormancy process
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005618	Cellular Component	cell wall
GO:0005730	Cellular Component	nucleolus
GO:0005739	Cellular Component	mitochondrion
GO:0005774	Cellular Component	vacuolar membrane
GO:0005829	Cellular Component	cytosol
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDKFPQIQFD LVFEKEFELS HNSKTTSVFF SGYNVFQPAQ GDEMDFDSED ESESEDEQEP 60 IIPPVAKENG KPEAKEQKKQ VLIDTGSSKS KAAAKDIGKS KKDDDSDDDG SDDDDSEDDS 120 ADGALIPMGD DSDDSEEGDE DSDSDEDSSD EEEEETPKKQ ETGKKRAAGS DIKTPVADKK 180 AKIATPSGQK TGDKKGAVHV ATPHPAKKVG KTPATSDKSP KSGGSVACKS CTKTFNSEVA 240 LASHAKAKHA AK

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_70585.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU348775	0.0	EU348775.1 Hordeum vulgare cultivar Caresse histone deacetylase HD2 isoform 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020199042.1	1e-88	histone deacetylase HDT2-like
Swissprot	Q9M4U5	2e-60	HDT2_MAIZE; Histone deacetylase HDT2
TrEMBL	C1IC97	1e-174	C1IC97_HORVU; Histone deacetylase HD2 isoform 1
STRING	MLOC_70585.1	1e-174	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	7e-14	histone deacetylase 2C

Publications ? help Back to Top
Demetriou K, et al. Epigenetic chromatin modifiers in barley: I. Cloning, mapping and expression analysis of the plant specific HD2 family of histone deacetylases from barley, during seed development and after hormonal treatment. Physiol Plant, 2009. 136(3): p. 358-68 [PMID:19470089]