PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70585.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 310aa    MW: 33345.2 Da    PI: 4.3882
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70585.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015286307323
                   ETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                   C+ C+k+F++   L +H +  H
  MLOC_70585.1 286 CKSCTKTFNSEVALASHAKAkH 307
                   *****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.118284310IPR007087Zinc finger, C2H2
PROSITE patternPS000280286307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFWGLEVKP NQSIKVSPED DHFLHLSQAA LGEVKKDDKT TLFVRVDGGQ KLAIGTLSMD  60
KFPQIQFDLV FEKEFELSHN SKTTSVFFSG YNVFQPAQGD EMDFDSEDES ESEDEQEPII  120
PPVAKENGKP EAKEQKKQVL IDTGSSKSKA AAKDIGKSKK DDDSDDDGSD DDDSEDDSAD  180
GALIPMGDDS DDSEEGDEDS DSDEDSSDEE EEETPKKQET GKKRAAGSDI KTPVADKKAK  240
IATPSGQKTG DKKGAVHVAT PHPAKKVGKT PATSDKSPKS GGSVACKSCT KTFNSEVALA  300
SHAKAKHAAK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3487750.0EU348775.1 Hordeum vulgare cultivar Caresse histone deacetylase HD2 isoform 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199042.11e-126histone deacetylase HDT2-like
SwissprotQ9M4U58e-87HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLC1IC970.0C1IC97_HORVU; Histone deacetylase HD2 isoform 1
STRINGMLOC_70585.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.27e-25histone deacetylase 3
Publications ? help Back to Top
  1. Demetriou K, et al.
    Epigenetic chromatin modifiers in barley: I. Cloning, mapping and expression analysis of the plant specific HD2 family of histone deacetylases from barley, during seed development and after hormonal treatment.
    Physiol Plant, 2009. 136(3): p. 358-68
    [PMID:19470089]