PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70567.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 175aa    MW: 19437.9 Da    PI: 8.3112
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70567.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35411332103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw e+  +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll +i+
  MLOC_70567.1  41 FLTKTYQLVDDPCTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLAEIH 128
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
  MLOC_70567.1 129 RRKSS 133
                   **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-5737130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3738130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-3338130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMEMGSG AHGGGGGGGG GGVGKPVPAP FLTKTYQLVD DPCTDHIVSW  60
GEDDATFVVW RPPEFARDLL PNYFKHNNFS SFVRQLNTYG FRKIVADRWE FANEFFRKGA  120
KHLLAEIHRR KSSQPPPPSM VPHQAAYHHH HYHLGNTFSP QPPPPAAAGH HQHHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23171303129Heat shock factor protein 1
5d5v_B3e-23171303129Heat shock factor protein 1
5d5v_D3e-23171303129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70567.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768810.0AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186930.11e-86heat stress transcription factor B-4b-like
SwissprotQ7XHZ02e-79HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLF2EL531e-127F2EL53_HORVV; Predicted protein
STRINGMLOC_70567.11e-128(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-64heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]