PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_70549.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Trihelix

Protein Properties

Length: 844aa MW: 91208.6 Da PI: 8.6153

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_70549.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.5	2.2e-29	287	371	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs++++e g +rs+k+C+ek+en+ k+y+++k+g+ +r ++ +t+++f++lea MLOC_70549.2 287 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRRLAEMGHTRSAKKCREKFENVDKYYRRTKDGRTGR--GDGKTYRFFTELEA 371 8******************************************************************97..77778****985 PP
2	trihelix	107	1.3e-33	565	650	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+eme r+++++ k+plWe++s mr+ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a MLOC_70549.2 565 RWPKAEVHALIQLRTEMEARYQDTAPKGPLWEDISVGMRRLGYNRSSKRCKEKWENINKYFKKVKESSRKR-PEDSKTCPYFHQLDA 650 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0012	284	346	IPR001005	SANT/Myb domain
CDD	cd12203	2.64E-27	286	351	No hit	No description
PROSITE profile	PS50090	6.899	286	344	IPR017877	Myb-like domain
Pfam	PF13837	3.2E-20	286	372	No hit	No description
SMART	SM00717	0.023	562	624	IPR001005	SANT/Myb domain
CDD	cd12203	7.37E-32	564	629	No hit	No description
PROSITE profile	PS50090	7.131	564	622	IPR017877	Myb-like domain
Pfam	PF13837	9.6E-23	565	651	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MCEKKTRPRV TFLTARAPTP SLSLSYHLLE GVHHLLRTHL SLSHRPSPFL PPQPPPAPGT 60 PPFSSSSTAI FILLFSAHLP PATVRTTLSS SSSCVTAPQP QHNPHPHLSL SPSPSPCQPS 120 LATQRPKPLL ISLPLLALLL LPPPPFSSPL PPLSFQVYSP VAAAAQPLHA CTAHGSAASL 180 PQHHPPNNPP LTTKQSCSIP LCGAMQQPPD MPPFSPAGWR GPAGAPSPIS SRPPAPTPAP 240 APGQQHQQHQ MDEQHGAAVS GSGSGSVDGG EEGERGGSSS AAPGGNRWPR QETLALLKIR 300 SEMDAAFREA ALKGPLWEEV SRRLAEMGHT RSAKKCREKF ENVDKYYRRT KDGRTGRGDG 360 KTYRFFTELE AMRFFEGLMR QVMERQEAMQ SRLLEAIERR DQDRMIREEA WRRQEVARLA 420 REQDALAQER AVAASRDAAV VSFIQRITGQ IVPVQAPSSF PAKPAATVTS VKPPPLQPTP 480 VASAAPAPAP PTPRPPVQAQ PNVTTPMRTQ PQTPQPQQHV TPTATPEPQP QTPQQQPHHQ 540 QSKEIVVHAP EQPPVDMAGG ASPSRWPKAE VHALIQLRTE MEARYQDTAP KGPLWEDISV 600 GMRRLGYNRS SKRCKEKWEN INKYFKKVKE SSRKRPEDSK TCPYFHQLDA LYRTKALAVG 660 SSSSSSSGVH APALQAPAPS SARAEPAAVT VLAPVPLSSQ TPSPAAQHVE HAAKNLISNG 720 NGHGNGAAMQ VKASNGAPPT VAMFPSSAQA AGNGANSGTA TNKLELKQEG VAKETAPVVQ 780 PAVAMNHSYG RNDRRDVYDL DSDSMDEDDE DDFDDDDDEE DDDVPGGRNI NMPPVLHQYD 840 AHFL

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MCEKKTRPRV TFLTARAPTP SLSLSYHLLE GVHHLLRTHL SLSHRPSPFL PPQPPPAPGT  60
PPFSSSSTAI FILLFSAHLP PATVRTTLSS SSSCVTAPQP QHNPHPHLSL SPSPSPCQPS  120
LATQRPKPLL ISLPLLALLL LPPPPFSSPL PPLSFQVYSP VAAAAQPLHA CTAHGSAASL  180
PQHHPPNNPP LTTKQSCSIP LCGAMQQPPD MPPFSPAGWR GPAGAPSPIS SRPPAPTPAP  240
APGQQHQQHQ MDEQHGAAVS GSGSGSVDGG EEGERGGSSS AAPGGNRWPR QETLALLKIR  300
SEMDAAFREA ALKGPLWEEV SRRLAEMGHT RSAKKCREKF ENVDKYYRRT KDGRTGRGDG  360
KTYRFFTELE AMRFFEGLMR QVMERQEAMQ SRLLEAIERR DQDRMIREEA WRRQEVARLA  420
REQDALAQER AVAASRDAAV VSFIQRITGQ IVPVQAPSSF PAKPAATVTS VKPPPLQPTP  480
VASAAPAPAP PTPRPPVQAQ PNVTTPMRTQ PQTPQPQQHV TPTATPEPQP QTPQQQPHHQ  540
QSKEIVVHAP EQPPVDMAGG ASPSRWPKAE VHALIQLRTE MEARYQDTAP KGPLWEDISV  600
GMRRLGYNRS SKRCKEKWEN INKYFKKVKE SSRKRPEDSK TCPYFHQLDA LYRTKALAVG  660
SSSSSSSGVH APALQAPAPS SARAEPAAVT VLAPVPLSSQ TPSPAAQHVE HAAKNLISNG  720
NGHGNGAAMQ VKASNGAPPT VAMFPSSAQA AGNGANSGTA TNKLELKQEG VAKETAPVVQ  780
PAVAMNHSYG RNDRRDVYDL DSDSMDEDDE DDFDDDDDEE DDDVPGGRNI NMPPVLHQYD  840
AHFL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_70549.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357823	0.0	AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163611.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A287Q356	0.0	A0A287Q356_HORVV; Uncharacterized protein
STRING	MLOC_70549.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	8e-48	Trihelix family protein