PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_70549.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Trihelix

Protein Properties

Length: 941aa MW: 101037 Da PI: 8.1717

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_70549.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.3	2.5e-29	287	371	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs++++e g +rs+k+C+ek+en+ k+y+++k+g+ +r ++ +t+++f++lea MLOC_70549.1 287 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRRLAEMGHTRSAKKCREKFENVDKYYRRTKDGRTGR--GDGKTYRFFTELEA 371 8******************************************************************97..77778****985 PP
2	trihelix	106.8	1.5e-33	662	747	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+eme r+++++ k+plWe++s mr+ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a MLOC_70549.1 662 RWPKAEVHALIQLRTEMEARYQDTAPKGPLWEDISVGMRRLGYNRSSKRCKEKWENINKYFKKVKESSRKR-PEDSKTCPYFHQLDA 747 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0012	284	346	IPR001005	SANT/Myb domain
CDD	cd12203	3.34E-27	286	351	No hit	No description
PROSITE profile	PS50090	6.899	286	344	IPR017877	Myb-like domain
Pfam	PF13837	3.7E-20	286	372	No hit	No description
SMART	SM00717	0.023	659	721	IPR001005	SANT/Myb domain
CDD	cd12203	9.69E-32	661	726	No hit	No description
PROSITE profile	PS50090	7.131	661	719	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-22	662	748	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MCEKKTRPRV TFLTARAPTP SLSLSYHLLE GVHHLLRTHL SLSHRPSPFL PPQPPPAPGT 60 PPFSSSSTAI FILLFSAHLP PATVRTTLSS SSSCVTAPQP QHNPHPHLSL SPSPSPCQPS 120 LATQRPKPLL ISLPLLALLL LPPPPFSSPL PPLSFQVYSP VAAAAQPLHA CTAHGSAASL 180 PQHHPPNNPP LTTKQSCSIP LCGAMQQPPD MPPFSPAGWR GPAGAPSPIS SRPPAPTPAP 240 APGQQHQQHQ MDEQHGAAVS GSGSGSVDGG EEGERGGSSS AAPGGNRWPR QETLALLKIR 300 SEMDAAFREA ALKGPLWEEV SRRLAEMGHT RSAKKCREKF ENVDKYYRRT KDGRTGRGDG 360 KTYRFFTELE ALHGAHQPPP AAPVSATIVT YSAVPTAPPR VLQAAEPSPP PLFLTHQPVP 420 TESPACLTTT APVGDASFSD SDGEDTDETA DGGKRKRRGG SWGHGGKAMR FFEGLMRQVM 480 ERQEAMQSRL LEAIERRDQD RMIREEAWRR QEVARLAREQ DALAQERAVA ASRDAAVVSF 540 IQRITGQIVP VQAPSSFPAK PAATVTSVKP PPLQPTPVAS AAPAPAPPTP RPPVQAQPNV 600 TTPMRTQPQT PQPQQHVTPT ATPEPQPQTP QQQPHHQQSK EIVVHAPEQP PVDMAGGASP 660 SRWPKAEVHA LIQLRTEMEA RYQDTAPKGP LWEDISVGMR RLGYNRSSKR CKEKWENINK 720 YFKKVKESSR KRPEDSKTCP YFHQLDALYR TKALAVGSSS SSSSGVHAPA LQAPAPSSAR 780 AEPAAVTVLA PVPLSSQTPS PAAQHVEHAA KNLISNGNGH GNGAAMQVKA SNGAPPTVAM 840 FPSSAQAAGN GANSGTATNK LELKQEGVAK ETAPVVQPAV AMNHSYGRND RRDVYDLDSD 900 SMDEDDEDDF DDDDDEEDDD VPGGRNINMP PVLHQYDAHF L

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MCEKKTRPRV TFLTARAPTP SLSLSYHLLE GVHHLLRTHL SLSHRPSPFL PPQPPPAPGT  60
PPFSSSSTAI FILLFSAHLP PATVRTTLSS SSSCVTAPQP QHNPHPHLSL SPSPSPCQPS  120
LATQRPKPLL ISLPLLALLL LPPPPFSSPL PPLSFQVYSP VAAAAQPLHA CTAHGSAASL  180
PQHHPPNNPP LTTKQSCSIP LCGAMQQPPD MPPFSPAGWR GPAGAPSPIS SRPPAPTPAP  240
APGQQHQQHQ MDEQHGAAVS GSGSGSVDGG EEGERGGSSS AAPGGNRWPR QETLALLKIR  300
SEMDAAFREA ALKGPLWEEV SRRLAEMGHT RSAKKCREKF ENVDKYYRRT KDGRTGRGDG  360
KTYRFFTELE ALHGAHQPPP AAPVSATIVT YSAVPTAPPR VLQAAEPSPP PLFLTHQPVP  420
TESPACLTTT APVGDASFSD SDGEDTDETA DGGKRKRRGG SWGHGGKAMR FFEGLMRQVM  480
ERQEAMQSRL LEAIERRDQD RMIREEAWRR QEVARLAREQ DALAQERAVA ASRDAAVVSF  540
IQRITGQIVP VQAPSSFPAK PAATVTSVKP PPLQPTPVAS AAPAPAPPTP RPPVQAQPNV  600
TTPMRTQPQT PQPQQHVTPT ATPEPQPQTP QQQPHHQQSK EIVVHAPEQP PVDMAGGASP  660
SRWPKAEVHA LIQLRTEMEA RYQDTAPKGP LWEDISVGMR RLGYNRSSKR CKEKWENINK  720
YFKKVKESSR KRPEDSKTCP YFHQLDALYR TKALAVGSSS SSSSGVHAPA LQAPAPSSAR  780
AEPAAVTVLA PVPLSSQTPS PAAQHVEHAA KNLISNGNGH GNGAAMQVKA SNGAPPTVAM  840
FPSSAQAAGN GANSGTATNK LELKQEGVAK ETAPVVQPAV AMNHSYGRND RRDVYDLDSD  900
SMDEDDEDDF DDDDDEEDDD VPGGRNINMP PVLHQYDAHF L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_70549.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357823	0.0	AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163611.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A287Q356	0.0	A0A287Q356_HORVV; Uncharacterized protein
STRING	MLOC_70549.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-48	Trihelix family protein