PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70503.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 280aa    MW: 30122.3 Da    PI: 4.6324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70503.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05237256120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++Cp C k+F+r  n++ H+
  MLOC_70503.1 237 FSCPVCFKTFNRYNNMQMHM 256
                   89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.57E-5233259No hitNo description
Gene3DG3DSA:3.30.160.603.8E-6237256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64237264IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MENPYTTFLK NYHQQRYYFP VTPVPPPPVP LMTAPAYSSS PFFSPPAPPA PPSSPPLREA  60
LPLLSLAPGS RRSRDQRRGR GPDDSDDGDD DVDEEHGEEG KQAPGPAASS DLHHNQQLSG  120
RRLFADLNSK AVDDPMDSEA GGAAGDVTVA LRIGLPSAGT AADLISGISA PATAARDDED  180
EDEDRVSREL SGGEDDGESE AAVAPVLGFA STPIGRLNKG QYWIPTPSQI LIGPTQFSCP  240
VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGIQPTAMLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568140.0AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180661.11e-114zinc finger protein WIP2-like
TrEMBLF2CYV80.0F2CYV8_HORVV; Predicted protein
STRINGMLOC_70503.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-43C2H2 family protein