PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70266.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family TCP
Protein Properties Length: 292aa    MW: 31125.7 Da    PI: 7.414
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70266.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.11.6e-30501493105
           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas.nsssgkaaksaaksk 98 
                   g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ + ++++ +    +   sa+ +++ ++ a+ a+ + 
  MLOC_70266.1  50 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAQHEIDKLPPLHFPPHDD----DLLLSAHhHHHLQSPASMAMVPP 142
                   78*************************************************************9999932....33333330222222222222222 PP

           TCP  99 ksqksaa 105
                   +s++ aa
  MLOC_70266.1 143 FSHATAA 149
                   2222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-2751145IPR005333Transcription factor, TCP
PROSITE profilePS5136930.15351109IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MISAGDHGND RRKFEPAAAG NKALQAAAAA SRHWSASTES RIVRVSRVFG GKDRHSKVRT  60
VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLN AAQHEIDKLP PLHFPPHDDD  120
LLLSAHHHHH LQSPASMAMV PPFSHATAAT ASMMVADGGK ATQSAHDGAG DLKGFMSLSN  180
SLGLVNGAGA AMPSLAAAQA GSYHHHYAAH EAWSNGGGNV VQEQLGGHRS SPFQSLLSLA  240
PVSQFVFYTP EDGFAMKDVA SDDQFPVDNL NDSQGQLSLS SERSFLHSGG QG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-2056110155Putative transcription factor PCF6
5zkt_B4e-2056110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70266.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3593590.0AK359359.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.13e-90transcription factor TCP13 isoform X1
RefseqXP_004961522.13e-90transcription factor TCP13 isoform X1
RefseqXP_012700333.13e-90transcription factor TCP13 isoform X1
TrEMBLM0YKK90.0M0YKK9_HORVV; Uncharacterized protein
STRINGMLOC_70266.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-33TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5