PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_70116.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | TCP | ||||||||
Protein Properties | Length: 357aa MW: 38246.6 Da PI: 7.11 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 157 | 1.1e-48 | 110 | 264 | 1 | 136 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k aike + + +++s+c e++sss s++ +++ MLOC_70116.1 110 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKGAIKEVMTD--EASSDCeEDGSSSLSVADGKHKqpgteagg 204 589**************************************************************..666679766666666663333356788899 PP TCP 89 ...........kaaksaa.kskksqksaasalnlakesrakarararertrekmriknkl 136 +a+k a+ ++k+++k a+++l ++kesr kar+rarertrek+r+++++ MLOC_70116.1 205 gdhadgkkpapRASKRAPaNPKPQRKLASAHLIPDKESRTKARERARERTREKNRMRWVT 264 99999999**9555555559999**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-44 | 112 | 260 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.116 | 113 | 171 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.733 | 240 | 257 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048831 | Biological Process | regulation of shoot system development |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MFPFYDSPSP MDLPLYQQLQ LSPPSPKAPD HQSLLYYHSS PAFAADPFHH NYLCAGAGAG 60 SGAGEATPPA AEIDDQSPSE LLLMDQAPAP RPDGAGKAQG LHGGGGLDSA AARKDRHSKI 120 CTAGGMRDRR MRLSLDVARK FFALQDMLGF DKASKTVQWL LNTSKGAIKE VMTDEASSDC 180 EEDGSSSLSV ADGKHKQPGT EAGGGDHADG KKPAPRASKR APANPKPQRK LASAHLIPDK 240 ESRTKARERA RERTREKNRM RWVTLASTIN IEPATTGMAA ARLDELVTSP NNLINRSSSM 300 NTPGAELEEG CSSSMPSEAI MAGFGNGGYG SIGNYYQHQL EQQWELGGVV FANSQHY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_70116.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF904738 | 0.0 | JF904738.1 Hordeum vulgare clone a2 tcp transcription factor (INT-C) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185348.1 | 0.0 | transcription factor TEOSINTE BRANCHED 1-like | ||||
Swissprot | Q8LN68 | 1e-114 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | A0A220NL60 | 0.0 | A0A220NL60_HORVU; INTERMEDIUM-C | ||||
TrEMBL | M0YK32 | 0.0 | M0YK32_HORVV; Tcp transcription factor Int-C | ||||
STRING | MLOC_70116.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-24 | TCP domain protein 12 |