PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69872.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 86aa    MW: 9401.08 Da    PI: 5.8306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69872.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-09246344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+  E e++ +a + +G +    W+++a+ +g g+t+ +++ ++
     MLOC_69872.1  2 AWSDAENERFERALATYGRDtagLWERVAAAVGGGKTADDVRRHY 46
                     7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.421154IPR017884SANT domain
PfamPF002494.3E-8146IPR001005SANT/Myb domain
SMARTSM007170.0041252IPR001005SANT/Myb domain
CDDcd001671.17E-6246No hitNo description
Gene3DG3DSA:1.10.10.601.3E-4251IPR009057Homeodomain-like
SuperFamilySSF466898.97E-10357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MAWSDAENER FERALATYGR DTAGLWERVA AAVGGGKTAD DVRRHYDLLT QDIGDIESGR  60
YGYPNGGANS STNPNNGRNR ANRPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-163791189RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156392.11e-40protein RADIALIS-like 3
SwissprotQ6NNN03e-21RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A3B6IST52e-42A0A3B6IST5_WHEAT; Uncharacterized protein
TrEMBLA0A446S9902e-42A0A446S990_TRITD; Uncharacterized protein
STRINGMLOC_69872.12e-56(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-21RAD-like 6