PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6971.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 552aa    MW: 61278.8 Da    PI: 4.5169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6971.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.58.7e-1301835522374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++cA+a+++ +  +aqa+++ l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P+++f++++aN
  MLOC_6971.1 183 KQLLFDCATALAEYNVDEAQAIITDLRQMVSIQGDPSHRIAAYLVEGLAARIVASGTGIYKALTCKDPP---TLYQLSAMQILFEICPCYRFGFMAAN 277
                  589*****************************************************************9...89999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aIlea +ge+r+HiiDfdi+qG Q+++L+q + + +++p++lRiTgv+++e++      l+ +g+rL+++Ae +g++fef++ v  ++ d+++ +L+
  MLOC_6971.1 278 YAILEACKGEQRMHIIDFDINQGSQYITLMQFMKDDANKPHHLRITGVDDHETVqrTVGGLKVIGQRLEQLAEDCGISFEFRA-VGADIGDVTPAMLD 374
                  **************************************************9988778889***********************.7999********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F +rf e  +yysalfdsl+a+lpres +r++vEr++l+re
  MLOC_6971.1 375 CRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFQTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLARE 472
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn++aceg +r+er e ++kWr+r+++aGF p p+s+++   +++ll+ + ++ y+ ee++g l +gW +++L+++SaW+
  MLOC_6971.1 473 IVNILACEGPDRVERYEVAGKWRARMTMAGFAPCPFSSNVIGGIRSLLSSYCDR-YKFEEDHGGLHFGWGEKTLIVASAWQ 552
                  ****************************************************66.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.366156533IPR005202Transcription factor GRAS
PfamPF035143.0E-127183552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSFVGRVDPS TTYADNIYVH KFGAPNSNFA GRRFGSDTQL FHYGPEPFNS EDYGHMGFPE  60
APSAAFQNSF YNQQASLTPC SDAAKDSPVC SNISQQNSQS ISDNQSSGLE VEFDPEIRLK  120
LQELEHALLD DGDDILFEVS QAGCISDEWA DPMKDVLLAN SPKESESSIS CAGSNSGEAR  180
TPKQLLFDCA TALAEYNVDE AQAIITDLRQ MVSIQGDPSH RIAAYLVEGL AARIVASGTG  240
IYKALTCKDP PTLYQLSAMQ ILFEICPCYR FGFMAANYAI LEACKGEQRM HIIDFDINQG  300
SQYITLMQFM KDDANKPHHL RITGVDDHET VQRTVGGLKV IGQRLEQLAE DCGISFEFRA  360
VGADIGDVTP AMLDCRPGEA LVVNFAFQLH HLPDESVSIM NERDQLLRMV KGLQPKLVTL  420
VEQDANTNTA PFQTRFREVY DYYSALFDSL DATLPRESPD RMNVERQCLA REIVNILACE  480
GPDRVERYEV AGKWRARMTM AGFAPCPFSS NVIGGIRSLL SSYCDRYKFE EDHGGLHFGW  540
GEKTLIVASA WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6118955126378Protein SCARECROW
5b3h_A1e-6118955125377Protein SCARECROW
5b3h_D1e-6118955125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6971.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496460.0AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172158.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLM0YIP00.0M0YIP0_HORVV; Uncharacterized protein
STRINGMLOC_6971.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]