PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_69575.1 | ||||||||
Common Name | WRKY61 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 360aa MW: 39608.4 Da PI: 8.3627 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 8.6e-32 | 92 | 148 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+ MLOC_69575.1 92 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPSCPVKKKVEHAE-DGQISEIIYKGKHNHQ 148 8**************************************99.***************8 PP | |||||||
2 | WRKY | 108 | 4.5e-34 | 248 | 306 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+a C+v+k++er+++dpk+v++tYeg+Hnhe MLOC_69575.1 248 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAACNVRKHIERASSDPKAVITTYEGKHNHE 306 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-28 | 88 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-25 | 90 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 91 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 92 | 148 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.192 | 92 | 150 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-36 | 234 | 308 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-29 | 240 | 308 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.609 | 243 | 308 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-39 | 248 | 307 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-26 | 249 | 306 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 360 aa Download sequence Send to blast |
MGGFGMSHQQ ALAQVTAQAS HSPLRMFDHT EQPSFSAAAT SSGALQNMSS AANVAEMSEM 60 ATTISNNEHA VFQSAEASHR YQVPAPVDKP ADDGYNWRKY GQKVVKGSDC PRSYYKCTHP 120 SCPVKKKVEH AEDGQISEII YKGKHNHQRP PNKRAKDGSS SAAEQNEQSN DTASGLSGVR 180 RDQEAVYGMS EQLSGLSDGD DKDDGESRPN EIDDRESHCK RRNIQISSQK ALTESKIIVQ 240 TTSEVDLLDD GYRWRKYGQK VVKGNPHPRS YYKCTFAACN VRKHIERASS DPKAVITTYE 300 GKHNHEPPVG RGSNQNGGNS NRAQQKGQNS MSSNQASHAR TDLGNINQGQ IGVLQFKREE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-39 | 92 | 308 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-39 | 92 | 308 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_69575.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX216840 | 0.0 | JX216840.1 Hordeum vulgare WRKY61 protein (WRKY61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168255.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9ZQ70 | 1e-103 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A287QRJ5 | 0.0 | A0A287QRJ5_HORVV; Uncharacterized protein | ||||
TrEMBL | I7B2W4 | 0.0 | I7B2W4_HORVU; WRKY61 protein | ||||
STRING | MLOC_69575.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-100 | WRKY DNA-binding protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|