PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_69454.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 125aa MW: 13092.3 Da PI: 4.9187 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 39.1 | 1.6e-12 | 104 | 125 | 5 | 26 |
zf-Dof 5 alkcprCdstntkfCyynnysl 26 l+cprCdstntkfCy+nnysl MLOC_69454.1 104 GLNCPRCDSTNTKFCYFNNYSL 125 689*****************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-14 | 88 | 125 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-9 | 105 | 124 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 125 aa Download sequence Send to blast |
MVFLPAFLDS SNFWNTDHNQ LIQMQQIGTN THSTTTPSQD GPGAGGCSNN NQEGFMAMAG 60 AGGSGDVGCG GAEDGDCGGS GNRKSTSSMS ERARLARLPQ PVPGLNCPRC DSTNTKFCYF 120 NNYSL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_69454.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181317.1 | 7e-37 | dof zinc finger protein DOF5.1-like | ||||
TrEMBL | A0A287MTK1 | 2e-85 | A0A287MTK1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_69454.1 | 4e-88 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G55370.2 | 1e-16 | OBF-binding protein 3 |