PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6930.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARR-B
Protein Properties Length: 405aa    MW: 45208.2 Da    PI: 7.3427
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6930.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24187239255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   r+ Wt eLH++F+ea++q+ G ++A Pk+ilelm+v  Lt++h+ SHLQkY+l
  MLOC_6930.1 187 LRVAWTIELHKKFIEAINQI-GLDRASPKKILELMNVGHLTRHHISSHLQKYKL 239
                  699*****************.*******************************97 PP
2Response_reg68.92.3e-23231311109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vd + + ++ l  +l++ +y + + + d++ al++l++ +  +Dl+++D++mp+mdG++ll+ i  e  +lp+i+++a ++++ + + ++ Ga 
   MLOC_6930.1  23 VLAVDNDCVCLMELDALLRRCKY-NPTIVMDAKTALKMLRAGKekFDLVITDVSMPDMDGFKLLEIIGLEM-DLPVIMLSADSDKKSVMKGINHGAC 117
                   7899*******************.999************776666********************996644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp++ +el +
   MLOC_6930.1 118 DYLVKPVHTNELKN 131
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.53E-3219141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-3620167No hitNo description
SMARTSM004481.6E-2621133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.06822137IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-2123131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.37E-2424136No hitNo description
SuperFamilySSF466895.55E-18183243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-26183244IPR009057Homeodomain-like
PROSITE profilePS5129410.717183242IPR017930Myb domain
TIGRFAMsTIGR015575.0E-21186239IPR006447Myb domain, plants
PfamPF002496.5E-8188238IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MDGEQRLMME DAAEDKFPEG LRVLAVDNDC VCLMELDALL RRCKYNPTIV MDAKTALKML  60
RAGKEKFDLV ITDVSMPDMD GFKLLEIIGL EMDLPVIMLS ADSDKKSVMK GINHGACDYL  120
VKPVHTNELK NIWQHVESRR YSEAISHVSG DDDDQGVQPG TAAKSIDGDD TDENRESTHT  180
CTTQKKLRVA WTIELHKKFI EAINQIGLDR ASPKKILELM NVGHLTRHHI SSHLQKYKLY  240
LKRVNSSPLG GAYERWNSSM NNLESFMHNH EHGRMGVSSG GIASWSPNHF GAEGHFGQHT  300
NTQSSLCTVS LIHGGRRPGY LVPQTPNVRR FSGFADAPVN LHNRILNGIR TSGGGRPAQT  360
NEYQVQPLES IFQYHTHMNA PSTRVVCTTG SPSKFQGFLG NYNNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19182245164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703068e-35HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197192.11e-142two-component response regulator ARR12-like
RefseqXP_020198970.11e-139two-component response regulator ORR24-like
TrEMBLM0YH790.0M0YH79_HORVV; Two-component response regulator
STRINGMLOC_6930.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15285415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.14e-85response regulator 12