PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_69156.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 233aa MW: 24981.9 Da PI: 9.549 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.6 | 2.4e-37 | 93 | 150 | 3 | 60 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 e+ l+cprC s++tkfCy+nny+++qPr+fC+aC+ryWt+GGa+rnvPvG+grrkn+ MLOC_69156.1 93 EARLPCPRCRSEDTKFCYFNNYNVNQPRHFCRACHRYWTAGGAIRNVPVGSGRRKNRP 150 56789***************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 8.5E-31 | 95 | 149 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-25 | 96 | 149 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.397 | 96 | 150 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 98 | 134 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MRRHLSLASE STGHTLTDMV SHSHLEMGGA AGIKLFGKVI TRQPTRQGTD GGGGGVPSKA 60 QQAPSMSSSS SSSGRGSVEQ LEEAARARAA AAEARLPCPR CRSEDTKFCY FNNYNVNQPR 120 HFCRACHRYW TAGGAIRNVP VGSGRRKNRP VLHGASTVMS ADNPLAGSAS QGMVNGLGFH 180 PDHGWSQVVP SPAYLGHGEM EQCWWLVHQY PAQGQVNGDV QLSPSSLRVN QYA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_69156.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357438 | 0.0 | AK357438.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053I13. | |||
GenBank | AK357968 | 0.0 | AK357968.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066A04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566046.2 | 2e-55 | dof zinc finger protein 5 | ||||
Swissprot | Q5JLR7 | 7e-38 | DOF5_ORYSJ; Dof zinc finger protein 5 | ||||
TrEMBL | M0YGP3 | 1e-172 | M0YGP3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_69156.1 | 1e-173 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 4e-32 | Dof family protein |
Publications ? help Back to Top | |||
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