PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68907.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 747aa    MW: 83941.8 Da    PI: 6.725
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68907.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36e-2372173199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++ +++a+e+       +++++  ++l+ +d++g  W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++
  MLOC_68907.1  72 FCKTLTASDTSTHGGFSVLRRHADEClpsldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESG 164
                   99****************************97555544..58************************************************..44999 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+v+v+r+
  MLOC_68907.1 165 ELRVGVRRA 173
                   9*****996 PP
2Auxin_resp111.49.1e-37198279183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+  Wp+S+WrsLk
  MLOC_68907.1 198 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 279
                   89******************************************************************999.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.41E-4065201IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-3965187IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-1970172No hitNo description
PfamPF023628.6E-2172173IPR003340B3 DNA binding domain
SMARTSM010194.5E-2172174IPR003340B3 DNA binding domain
PROSITE profilePS5086311.70272174IPR003340B3 DNA binding domain
PfamPF065071.1E-33198279IPR010525Auxin response factor
PfamPF023093.4E-5608662IPR033389AUX/IAA domain
SuperFamilySSF542771.13E-12620703No hitNo description
PROSITE profilePS5174525.01626719IPR000270PB1 domain
PfamPF023099.5E-8667710IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009737Biological Processresponse to abscisic acid
GO:0009911Biological Processpositive regulation of flower development
GO:0010047Biological Processfruit dehiscence
GO:0010150Biological Processleaf senescence
GO:0010227Biological Processfloral organ abscission
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MNQVAGNQMR LYDLPPKLLC RVINVELKAE ADTDEVYAQV MLMPEPEQNE MAVDKSTSTT  60
GATPPRPAVR SFCKTLTASD TSTHGGFSVL RRHADECLPS LDMTQSPPTQ ELVAKDLHGM  120
DWRFRHIFRG QPRRHLLQSG WSVFVSSKRL VAGDAFIFLR GESGELRVGV RRAMRQLSNV  180
PSSVISSHSM HLGVLATAWH AINTKSMFTV YYKPRTSPSE FIIPYDQYME SVKNNYSIGM  240
RFRMRFEGEE APEQRFTGTI VGSENLDQLW PESNWRSLKV RWDEPSTIPR PDRVSPWKIE  300
PASSPPVNPL PLSRVKRPRP NVPPVSPESS VLTKEGATKI DMDSAQAQQR NQNNMVLQGQ  360
EHMTLRTNNL TGSNDSDATV QKPMMWSPSP NIGKNHASAF QQRPSMENWM QLGRCETAFK  420
DASSGAQSFG DSQGFFMQTF DEAPNRHGSF KNQFQDHSSA RHFSDPYTKM HTEANEFHFW  480
NSQSTVYGNP RDQSQGFRFE EHPSNWLRQQ QFSPVEQPRV IRPQASIAPV DLEKAREGSG  540
FKIFGFKVDT TSAPSNHLSS TMAVIHEPVL QTQASASLTQ LQHAHIDCIP ELSVSTAGTT  600
ENEKSIQQAP NSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFGDY DELTAELDRM  660
FEFDGELMSS NRDWQIVYTD PEGDMMLVGD DPWEEFCSIV RKIFIYTKEE VQKMNSKSST  720
PRKEEGSADA DGANEKAHLA ASSHLDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-142130456357Auxin response factor 1
4ldw_A1e-142130456357Auxin response factor 1
4ldw_B1e-142130456357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315319KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00574DAPTransfer from AT5G62000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3648520.0AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02.
GenBankAK3687850.0AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198715.10.0auxin response factor 4-like
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A287MEW00.0A0A287MEW0_HORVV; Auxin response factor
STRINGMLOC_68907.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]