PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_689.9
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 303aa    MW: 34423.9 Da    PI: 9.2144
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_689.9genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.9e-18113205699
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                 ++s +l  g l + k++a eh     e+  +tl + +++++W v ++  + +g+y l++GW++Fv++n+L+ gD++vF++  r ++f++ v+++++
  MLOC_689.9 113 ISSASLVDGFLAICKDYAIEHLPR--EDEAITLCHaSHSKTWVVHYK-INADGTYHLSAGWSGFVNDNELQKGDTCVFEVLMRqRSFTMAVHLLKT 205
                 46666777889*********9533..3445777665899*******4.55556799***********************55444******999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-19101203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.75E-19103203IPR015300DNA-binding pseudobarrel domain
CDDcd100174.79E-15107204No hitNo description
PROSITE profilePS5086313.902108206IPR003340B3 DNA binding domain
SMARTSM010193.2E-7109206IPR003340B3 DNA binding domain
PfamPF023623.4E-15114204IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292217303IPR003340B3 DNA binding domain
SMARTSM010190.031223303IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-13233301IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-7234301No hitNo description
Gene3DG3DSA:2.40.330.104.6E-11236301IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MNHNPGPPKR GAPHDDPMLS PEGERLAKRH NGCCGDICKT SKMNAAGSPL KPSKAKKEAP  60
SSEDARSSGE LQTSTRSRYF LATGCNLTEA HKVEVNRIEQ NIRPEIPLYA KTISSASLVD  120
GFLAICKDYA IEHLPREDEA ITLCHASHSK TWVVHYKINA DGTYHLSAGW SGFVNDNELQ  180
KGDTCVFEVL MRQRSFTMAV HLLKTRYHHP PGFAASSKSL RPEAKSFRPE DKAFSLDYAN  240
DYLPGQDQNF RLHRPRESAP WKTQFRRFAS RRWLVRGWNQ FVIDNELKLD DVCLFERIEN  300
KKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_689.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318846.11e-102LOW QUALITY PROTEIN: B3 domain-containing protein LOC_Os12g40080
TrEMBLM0YFU70.0M0YFU7_HORVV; Uncharacterized protein
STRINGEMT089251e-161(Aegilops tauschii)