PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68896.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 330aa    MW: 35722.3 Da    PI: 6.1857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68896.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-14147193455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h ++Er+RR++iN +f eL +++P +     kK++Ka+iL  Av+Y+k+ q
  MLOC_68896.2 147 EHVMAERKRREKINRRFIELSTVIPGL-----KKMDKATILSDAVRYVKEQQ 193
                   699************************.....9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.796143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16147201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-12147193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-15148201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-15148197No hitNo description
SMARTSM003532.6E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDDSSMFIQW AMETLEQEKD AAGAGDVFPS SLLELDSSRL ELSHSAGLQN GMDMAAHRYG  60
ATDSWSSGDS GAAVVVENDG WSSNCSTNYP AASWNFTSAI PQPASIIKTT PSPSAAPSHV  120
VPELEHRSPP SRKSSGASRG TVPTVQEHVM AERKRREKIN RRFIELSTVI PGLKKMDKAT  180
ILSDAVRYVK EQQEKLKAFE DRDVRSIDSV VLVKRPCISG VDDGCPSPPS GATRGGLQTA  240
RISLPEIEAT LSEINVMVRI HCEDGKGVLV TLLAEVEGLH LTITHTNVVS FPASTLIVNL  300
IAKLDEGFTV TADDIIRKLD SALRRHHNGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68896.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646674e-64AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171135.10.0transcription factor bHLH18-like
TrEMBLM0YFT10.0M0YFT1_HORVV; Uncharacterized protein
STRINGMLOC_68896.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-41bHLH family protein