PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68844.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 365aa MW: 36828.8 Da PI: 8.6563 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 63 | 124 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss MLOC_68844.5 63 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 124 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 60 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-33 | 65 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 67 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 69 | 105 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MEEMLMGAPS ANQVQGSNPN APAQAPSSAP GAAGAMRGAP PAMAVAVSGV GAGSTERRPR 60 PQKEKAINCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK 120 RSSSSSSASA SAAASATASA ANSSMLGAAP NKNPKLAHEG AAHDLNLAFP HHQGGMQAQA 180 DYMAFPSLES SSMCNPGGGG MAGNGARASG ALSAMELLRS TGCYMPLQMP MQMPGDYGAA 240 GFSLGEFRAP PPPPQSQSQS LMGFSLDAHG PVGGASSAGY GSSAAMQGMQ DRASRLLFAF 300 EDLKPTASSG GAGGGESGGG SGGAADGGGH QFEQGNKEQQ GNGTPVGQPD TPGFWNGMIG 360 GGGTW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 308 | 320 | SGGAGGGESGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68844.5 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372117 | 0.0 | AK372117.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2146K16. | |||
GenBank | AK375958 | 0.0 | AK375958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111B19. | |||
GenBank | AM084350 | 0.0 | AM084350.1 Hordeum vulgare subsp. vulgare dof2 gene for dof zinc finger protein 2, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020147698.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X1 | ||||
Refseq | XP_020147699.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
Refseq | XP_020147700.1 | 0.0 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
Swissprot | Q9SXG8 | 1e-112 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | F2EII1 | 0.0 | F2EII1_HORVV; Predicted protein | ||||
STRING | MLOC_68844.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 5e-40 | Dof family protein |
Publications ? help Back to Top | |||
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