PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_68844.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 365aa MW: 36828.8 Da PI: 8.6563

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_68844.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	63	124	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss MLOC_68844.4 63 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 124 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-31	60	121	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	65	121	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	67	121	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	69	105	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEEMLMGAPS ANQVQGSNPN APAQAPSSAP GAAGAMRGAP PAMAVAVSGV GAGSTERRPR 60 PQKEKAINCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK 120 RSSSSSSASA SAAASATASA ANSSMLGAAP NKNPKLAHEG AAHDLNLAFP HHQGGMQAQA 180 DYMAFPSLES SSMCNPGGGG MAGNGARASG ALSAMELLRS TGCYMPLQMP MQMPGDYGAA 240 GFSLGEFRAP PPPPQSQSQS LMGFSLDAHG PVGGASSAGY GSSAAMQGMQ DRASRLLFAF 300 EDLKPTASSG GAGGGESGGG SGGAADGGGH QFEQGNKEQQ GNGTPVGQPD TPGFWNGMIG 360 GGGTW

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEEMLMGAPS ANQVQGSNPN APAQAPSSAP GAAGAMRGAP PAMAVAVSGV GAGSTERRPR  60
PQKEKAINCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK  120
RSSSSSSASA SAAASATASA ANSSMLGAAP NKNPKLAHEG AAHDLNLAFP HHQGGMQAQA  180
DYMAFPSLES SSMCNPGGGG MAGNGARASG ALSAMELLRS TGCYMPLQMP MQMPGDYGAA  240
GFSLGEFRAP PPPPQSQSQS LMGFSLDAHG PVGGASSAGY GSSAAMQGMQ DRASRLLFAF  300
EDLKPTASSG GAGGGESGGG SGGAADGGGH QFEQGNKEQQ GNGTPVGQPD TPGFWNGMIG  360
GGGTW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	320	SGGAGGGESGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_68844.4

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372117	0.0	AK372117.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2146K16.
GenBank	AK375958	0.0	AK375958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111B19.
GenBank	AM084350	0.0	AM084350.1 Hordeum vulgare subsp. vulgare dof2 gene for dof zinc finger protein 2, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147698.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
Refseq	XP_020147699.1	0.0	dof zinc finger protein DOF4.6-like isoform X2
Refseq	XP_020147700.1	0.0	dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q9SXG8	1e-112	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	F2EII1	0.0	F2EII1_HORVV; Predicted protein
STRING	MLOC_68844.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	5e-40	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]