PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68844.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 380aa    MW: 38430.6 Da    PI: 8.6563
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68844.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-3978139263
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                   keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  MLOC_68844.2  78 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 139
                   7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3175136IPR003851Zinc finger, Dof-type
PfamPF027013.6E-3380136IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90182136IPR003851Zinc finger, Dof-type
PROSITE patternPS01361084120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDAAHWPQGL GLVKPMEEML MGAPSANQVQ GSNPNAPAQA PSSAPGAAGA MRGAPPAMAV  60
AVSGVGAGST ERRPRPQKEK AINCPRCNST NTKFCYYNNY SLQQPRYFCK TCRRYWTEGG  120
SLRNVPVGGG SRKNKRSSSS SSASASAAAS ATASAANSSM LGAAPNKNPK LAHEGAAHDL  180
NLAFPHHQGG MQAQADYMAF PSLESSSMCN PGGGGMAGNG ARASGALSAM ELLRSTGCYM  240
PLQMPMQMPG DYGAAGFSLG EFRAPPPPPQ SQSQSLMGFS LDAHGPVGGA SSAGYGSSAA  300
MQGMQDRASR LLFAFEDLKP TASSGGAGGG ESGGGSGGAA DGGGHQFEQG NKEQQGNGTP  360
VGQPDTPGFW NGMIGGGGTW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323335SGGAGGGESGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68844.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721170.0AK372117.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2146K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147698.10.0dof zinc finger protein DOF4.6-like isoform X1
SwissprotQ9SXG81e-122DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBLA5HWF10.0A5HWF1_HORVV; Dof zinc finger protein 2
STRINGMLOC_68844.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.46e-40Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]