PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 76aa MW: 8876.08 Da PI: 10.0285 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.7 | 7.3e-10 | 31 | 70 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +T+ E++l + +++ G++ W++Ia +++ gRt++++ +w MLOC_68772.1 31 FTEAEEDLVFRMHRLVGNR-WELIAGRIP-GRTAEEVEMFWA 70 9******************.*********.*******98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.272 | 23 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-7 | 27 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-9 | 31 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-12 | 31 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-7 | 31 | 69 | No hit | No description |
SuperFamily | SSF46689 | 6.63E-9 | 31 | 72 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MSSKSLGKNS KIMSGRERKE VNSNAKHFVD FTEAEEDLVF RMHRLVGNRW ELIAGRIPGR 60 TAEEVEMFWA KKHQDQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in trichome cell specification. Acts as a negative regulator of trichome patterning and formation. May function by suppressing the expression of GL3. {ECO:0000269|PubMed:22168948}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68772.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248836 | 1e-126 | AK248836.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf6c21, mRNA sequence. | |||
GenBank | AK370851 | 1e-126 | AK370851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2118H15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165156.1 | 9e-47 | MYB-like transcription factor TCL2 | ||||
Refseq | XP_020165157.1 | 9e-47 | MYB-like transcription factor TCL2 | ||||
Refseq | XP_020172618.1 | 9e-47 | MYB-like transcription factor TCL2 | ||||
Refseq | XP_020172619.1 | 9e-47 | MYB-like transcription factor TCL2 | ||||
Swissprot | B3H4X8 | 2e-18 | TCL2_ARATH; MYB-like transcription factor TCL2 | ||||
TrEMBL | F2E3X7 | 5e-49 | F2E3X7_HORVV; Predicted protein | ||||
STRING | MLOC_68772.1 | 9e-50 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5275 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01060.1 | 3e-22 | CAPRICE-like MYB3 |
Publications ? help Back to Top | |||
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