PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68511.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26516.7 Da PI: 5.6923 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.6 | 7e-09 | 2 | 28 | 21 | 48 |
TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia++++ Rt++++k++w+++l MLOC_68511.2 2 ECRWAAIASYLP-QRTDNDIKNYWNTHL 28 568*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 7.19E-7 | 1 | 27 | No hit | No description |
PROSITE profile | PS51294 | 16.663 | 1 | 32 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-7 | 2 | 28 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.38E-8 | 3 | 35 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.9E-13 | 3 | 35 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
GECRWAAIAS YLPQRTDNDI KNYWNTHLKK KLKKQQALGA IFAPPPPPSS SAETAANLPA 60 AVHLDHHHHR YHHDAIAASS STVDHGCYAA CSNPEVTQQH TTITMRRSPF ADVATDCSSS 120 SYASSMDNIS RLLDGFMKSS PPTATDVKPN IAVFSDPFMS FDRMTGAGAG LAFVPGVQQQ 180 QQQMPVLMGG MIYDDEATGQ QQQLQHQLPL CSIEKWLLDE AAEQVADLME LSDGDCSSLP 240 LLY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68511.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357478 | 0.0 | AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172742.1 | 1e-127 | myb-related protein 306-like | ||||
TrEMBL | A0A287R141 | 1e-177 | A0A287R141_HORVV; Uncharacterized protein | ||||
STRING | MLOC_68511.1 | 1e-178 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.2 | 7e-12 | myb domain protein 60 |