PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 327aa    MW: 36042.8 Da    PI: 6.8269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68511.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv ++++ G+g+W++++   g+ R+ k+c++rw +yl
     MLOC_68511.1 14 KGPWTPEEDIILVSYIQENGPGNWRAVPINTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding47.54.1e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++Tt E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
     MLOC_68511.1  67 RGNFTTHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129423.676965IPR017930Myb domain
SuperFamilySSF466894.97E-2911108IPR009057Homeodomain-like
SMARTSM007174.4E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001671.38E-101661No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2365117IPR009057Homeodomain-like
PROSITE profilePS5129417.99266116IPR017930Myb domain
SMARTSM007172.0E-1266114IPR001005SANT/Myb domain
PfamPF002491.4E-1267112IPR001005SANT/Myb domain
CDDcd001679.30E-969111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ ENGPGNWRAV PINTGLMRCS KSCRLRWTNY  60
LRPGIRRGNF TTHEEGIIVH LQSLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKQQ  120
ALGAIFAPPP PPSSSAETAA NLPAAVHLDH HHHRYHHDAI AASSSTVDHG CYAACSNPEV  180
TQQHTTITMR RSPFADVATD CSSSSYASSM DNISRLLDGF MKSSPPTATD VKPNIAVFSD  240
PFMSFDRMTG AGAGLAFVPG VQQQQQQMPV LMGGMIYDDE ATGQQQQLQH QLPLCSIEKW  300
LLDEAAEQVA DLMELSDGDC SSLPLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25141164105C-Myb DNA-Binding Domain
1msf_C3e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68511.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574780.0AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172742.10.0myb-related protein 306-like
SwissprotB3VTV71e-94MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A287R1410.0A0A287R141_HORVV; Uncharacterized protein
STRINGMLOC_68511.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-76myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]