PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_68487.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

SRS

Protein Properties

Length: 279aa MW: 28991.1 Da PI: 9.182

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_68487.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.2	1.1e-68	101	252	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 s ++sCqdCGnqakkdC+h+RCRtCCksrgf C+thvkstWvpa+krrerqqql+a++++aaa++a a + r+ +++ +++ a+++ ++ss+++++ MLOC_68487.1 101 SAGTSCQDCGNQAKKDCQHQRCRTCCKSRGFACSTHVKSTWVPASKRRERQQQLTALAASAAATTAGAGPSRDPTKRPRARLAVTTPTTSSGDQQMV 197 56789**************************************************9999999988888888888899999*********** PP DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + ++++P+evsseavfrcvr++ vd++e+elaYqt+vsigGhvfkGiL+d G+++ MLOC_68487.1 198 TVAERFPREVSSEAVFRCVRLGPVDQAEAELAYQTTVSIGGHVFKGILHDVGPSS 252 **************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-64	103	251	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-26	105	147	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.7E-23	202	250	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MAGFPLGTGG SGRDSPASPP GVHPSDASTF LYATRGGGFQ LWGQPQDQHQ HQHQLTHPFY 60 ASNLIRFATD DLPAGAAQSL AGAASSSSSR AARAAALAGG SAGTSCQDCG NQAKKDCQHQ 120 RCRTCCKSRG FACSTHVKST WVPASKRRER QQQLTALAAS AAATTAGAGP SRDPTKRPRA 180 RLAVTTPTTS SGDQQMVTVA ERFPREVSSE AVFRCVRLGP VDQAEAELAY QTTVSIGGHV 240 FKGILHDVGP SSNAHAQLQA AAGGSGSDYQ FRLTGDVSP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_68487.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241285	1e-157	AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192267.1	1e-146	protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9SD40	1e-48	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A1I9RHF0	0.0	A0A1I9RHF0_HORVU; SHI
TrEMBL	A0A1I9RHF6	0.0	A0A1I9RHF6_HORVU; SHI
STRING	MLOC_68487.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-46	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]