PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68417.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 264aa    MW: 28864.4 Da    PI: 5.6731
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68417.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.61.5e-31141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y +++d++++ ++ w   gnsfvv d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll +i 
  MLOC_68417.1  14 FVAKTYGMVDDRATDAVVAWGPAGNSFVVADPFAFSEMLLPAHFKHANFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLPRIV 101
                   9****************************************************************999.........*******************9 PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
  MLOC_68417.1 102 RRRQ 105
                   9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.58E-319103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-4910103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-2814103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-171437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-175264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMSCGGMGSG VAPFVAKTYG MVDDRATDAV VAWGPAGNSF VVADPFAFSE MLLPAHFKHA  60
NFSSFVRQLN TYGFRKVDPD RWEFAHASFL RGQTHLLPRI VRRRQGSGKR GKGDGADGDE  120
EDDTGATALA MEVVRLRNEQ RATEERVADM WRRVQETERR PKQMLAFLLK VVGDPDVLRR  180
LAGSGQDEGA RANTQRLLLD SSEAQRRMSV DGAGVDEMML YHGSGMNLNL EEALMPEEGL  240
CYAGGDVQAG GGGQTYALHV DSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-24910315120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68417.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584060.0AK358406.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075P13.
GenBankAK3664600.0AK366460.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043E04.
GenBankAK3677060.0AK367706.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2060N11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162064.11e-118heat stress transcription factor C-2a-like
SwissprotQ6EUG43e-82HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A287Q3Y70.0A0A287Q3Y7_HORVV; Uncharacterized protein
STRINGMLOC_68417.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-61heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]