PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68409.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 24905.3 Da PI: 8.2908 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.3 | 4.3e-11 | 121 | 205 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++ ++g l +p +f e + + ++ t++l d++ ++e+++ k g+ + +GW+ F ++L +gD +vF+l++r++f +v ++ MLOC_68409.2 121 PI-SNYSDARGPLGIPLQFREMYL--PWCDETISLIDQEDVEFEMTY--LAKHGA--ICSGWSLFSIGHKLADGDCLVFQLVQRTKF--KVYII 205 44.678888999*******98885..57999****************..677666..679**********************99998..67665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-13 | 112 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-16 | 113 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.09E-13 | 116 | 205 | No hit | No description |
PROSITE profile | PS50863 | 8.783 | 117 | 208 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-5 | 118 | 208 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-7 | 123 | 205 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MAEPNSYEEQ RRRQVEENKR KLDELRLHRL STAVREAAVK PVPTEEPKLR YLRPPPPPTR 60 RSGRVAGLPK QPDYRYSVDN TRRELPPAPV YATNEASTYA FTKAKELKNQ LCSDQPSFIK 120 PISNYSDARG PLGIPLQFRE MYLPWCDETI SLIDQEDVEF EMTYLAKHGA ICSGWSLFSI 180 GHKLADGDCL VFQLVQRTKF KVYIIGASSY YEQDHH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68409.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374346 | 1e-44 | AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175454.1 | 1e-107 | B3 domain-containing protein Os06g0194400-like | ||||
Refseq | XP_020175455.1 | 1e-107 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 7e-71 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A3B6C268 | 1e-102 | A0A3B6C268_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446M1B0 | 1e-102 | A0A446M1B0_TRITD; Uncharacterized protein | ||||
STRING | MLOC_68409.2 | 1e-161 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-32 | B3 family protein |
Publications ? help Back to Top | |||
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