PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68285.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | TCP | ||||||||
Protein Properties | Length: 455aa MW: 47718 Da PI: 7.02 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.4 | 2.6e-34 | 85 | 181 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssas 83 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l + ++++s+++++s +s++ MLOC_68285.1 85 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDNLDTLpawqptavapaasnaAAPPSSSTQPDSADNSDD 181 79**************************************************************666655555444433222222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-31 | 85 | 171 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.669 | 87 | 145 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MGDAGQSHSH HHHGLQTQLL SFGGAGNHHH HMHQFTAQAQ PPPASQTRAR GGRGGEMVPA 60 TPARVRGGGG GEIVAVQGGH IVRSTGRKDR HSKVCTARGP RDRRVRLSAH TAIQFYDVQD 120 RLGYDRPSKA VDWLIKNAKD AIDNLDTLPA WQPTAVAPAA SNAAAPPSSS TQPDSADNSD 180 DQAQAITIAH SSFDFAGSGG AGGATGGISF LPPSLDSDSI ADTIKSFFPM GGTAGGEPSS 240 STVAAHSSAM GFQGYTPDLL SRTGSQSQEL RLSLQPLPDP MFHHHHQQQE QHRSDGHDGN 300 GTAQQALFPG ATSYSFGGGG AMWAEQAPSQ RMMPWNVPDP GGGSTGGYLF NVSQQAAHMQ 360 AALSGQSQFF FQRGPLQSSN QPSDRGWPET VEADDNNPMQ QQHHQGGLNP SVSAIGFGPG 420 VSFSGFRVPA RMQGNEEHSG GNGDKPPSVS SASRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 92 | 145 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 92 | 145 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68285.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376641 | 0.0 | AK376641.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129N09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175459.1 | 0.0 | transcription factor PCF5-like | ||||
Refseq | XP_020175460.1 | 0.0 | transcription factor PCF5-like | ||||
Swissprot | Q8LT07 | 1e-180 | PCF5_ORYSJ; Transcription factor PCF5 | ||||
TrEMBL | F2EKG4 | 0.0 | F2EKG4_HORVV; Predicted protein | ||||
STRING | MLOC_68285.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5839 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-38 | TCP family protein |