PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68272.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 667aa    MW: 76595.2 Da    PI: 7.0931
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68272.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.22.8e-2383175290
          FAR1   2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   fYneYA  +GF +r+++s+++  k ++  ++++fvC keg+++++k+   ++k++r+r + r gC a+++v ++  +kw++tkl+leH+H ++
  MLOC_68272.3  83 FYNEYALGLGFGIRVARSRSErrKGTEVLVMKRFVCMKEGHHKKKKDVdsSNKKKRKRLSIREGCPAMMEVVRRAPEKWVITKLVLEHTHVIV 175
                   9*************99988874355667899*********9999887666899999**********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-2183175IPR004330FAR1 DNA binding domain
PfamPF105513.4E-24260351IPR018289MULE transposase domain
PROSITE profilePS509669.099540576IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-6547574IPR007527Zinc finger, SWIM-type
SMARTSM005750.007551578IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEFSSSEDRE LVEDFIDVED DTGTADVDQP PGVMTSHVHC IDPSEGSMST AGNELLPVAD  60
ELGKNAEPYL GMEFASDAAA RAFYNEYALG LGFGIRVARS RSERRKGTEV LVMKRFVCMK  120
EGHHKKKKDV DSSNKKKRKR LSIREGCPAM MEVVRRAPEK WVITKLVLEH THVIVSPDKA  180
REVQLLHLSG KEHADTLQEV RRNVFGDTGA SDLFTYLMRR QSDNSGFFYN VQVDSRNCLR  240
NAVWVDARSK ISYKYFGDAV YFDTTYTQNE NMLPFAAFTG VNHHGDCVVF GCALVLDKTE  300
SSYAWIFETW LTAMDKRLPF SFTTDEGKTM TEAVAKTFPQ CFHRLCRWRV LSKCKKKLSD  360
VYMRFPELHN ELKRCVNECD TMPVFDMFWG SILDKYDLRE NTWLQSLFEA RNKWVPAYLT  420
GSFFAELSLT RRAETISRFY RNNFSTRAPL LSFITTFDQH IDRLYMNEAQ KDLALFSPEQ  480
LLKTNSILEK QAASIYTRAA FEFFQMELIE SLHHYAVKVQ ESPYEAKYYV ERDGDPPTRH  540
TVVYNGAEEK VWCDCCRFAF SAILCRHVLG VFILADIDMI PEPCITKRWT KKAKTGPVFV  600
GRILEDENRH TDSVTSRFSD LVCDGMMCGE KGTLSEGSFK FAKELLRNAY REIDKLTKAG  660
SQQVGNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125139KKKDVDSSNKKKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68272.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3764420.0AK376442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185207.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM0YDW60.0M0YDW6_HORVV; Uncharacterized protein
STRINGMLOC_68272.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-120FAR1-related sequence 5