PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68272.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | FAR1 | ||||||||
Protein Properties | Length: 667aa MW: 76595.2 Da PI: 7.0931 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.2 | 2.8e-23 | 83 | 175 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYneYA +GF +r+++s+++ k ++ ++++fvC keg+++++k+ ++k++r+r + r gC a+++v ++ +kw++tkl+leH+H ++ MLOC_68272.2 83 FYNEYALGLGFGIRVARSRSErrKGTEVLVMKRFVCMKEGHHKKKKDVdsSNKKKRKRLSIREGCPAMMEVVRRAPEKWVITKLVLEHTHVIV 175 9*************99988874355667899*********9999887666899999**********************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.4E-21 | 83 | 175 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.4E-24 | 260 | 351 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.099 | 540 | 576 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-6 | 547 | 574 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.007 | 551 | 578 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MEFSSSEDRE LVEDFIDVED DTGTADVDQP PGVMTSHVHC IDPSEGSMST AGNELLPVAD 60 ELGKNAEPYL GMEFASDAAA RAFYNEYALG LGFGIRVARS RSERRKGTEV LVMKRFVCMK 120 EGHHKKKKDV DSSNKKKRKR LSIREGCPAM MEVVRRAPEK WVITKLVLEH THVIVSPDKA 180 REVQLLHLSG KEHADTLQEV RRNVFGDTGA SDLFTYLMRR QSDNSGFFYN VQVDSRNCLR 240 NAVWVDARSK ISYKYFGDAV YFDTTYTQNE NMLPFAAFTG VNHHGDCVVF GCALVLDKTE 300 SSYAWIFETW LTAMDKRLPF SFTTDEGKTM TEAVAKTFPQ CFHRLCRWRV LSKCKKKLSD 360 VYMRFPELHN ELKRCVNECD TMPVFDMFWG SILDKYDLRE NTWLQSLFEA RNKWVPAYLT 420 GSFFAELSLT RRAETISRFY RNNFSTRAPL LSFITTFDQH IDRLYMNEAQ KDLALFSPEQ 480 LLKTNSILEK QAASIYTRAA FEFFQMELIE SLHHYAVKVQ ESPYEAKYYV ERDGDPPTRH 540 TVVYNGAEEK VWCDCCRFAF SAILCRHVLG VFILADIDMI PEPCITKRWT KKAKTGPVFV 600 GRILEDENRH TDSVTSRFSD LVCDGMMCGE KGTLSEGSFK FAKELLRNAY REIDKLTKAG 660 SQQVGNR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 139 | KKKDVDSSNKKKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68272.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376442 | 0.0 | AK376442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185207.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | M0YDW6 | 0.0 | M0YDW6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_68272.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-120 | FAR1-related sequence 5 |