PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6821.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 282aa    MW: 32152.7 Da    PI: 6.2411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6821.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-184592148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ lv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
      MLOC_6821.2 45 RGPWTVEEDLTLVNYIADHGDGRWNSLARGAGLKRTGKSCRLRWLNYL 92
                     89********************************************97 PP
2Myb_DNA-binding55.81.1e-1798141146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
      MLOC_6821.2  98 RGNFTADEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 141
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1524092IPR017930Myb domain
SuperFamilySSF466894.12E-3043139IPR009057Homeodomain-like
SMARTSM007179.8E-154494IPR001005SANT/Myb domain
PfamPF002492.3E-164592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-234699IPR009057Homeodomain-like
CDDcd001678.53E-114792No hitNo description
PROSITE profilePS5129423.8693147IPR017930Myb domain
SMARTSM007171.2E-1597145IPR001005SANT/Myb domain
PfamPF002494.0E-1698141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-24100146IPR009057Homeodomain-like
CDDcd001673.16E-11100141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MASWSSSSTQ RRSGVSSGAT MPCSVMKFDD DLLRHEEEAA EEIRRGPWTV EEDLTLVNYI  60
ADHGDGRWNS LARGAGLKRT GKSCRLRWLN YLRPDVKRGN FTADEQLLIL DLHSRWGNRW  120
SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL NCDANSSKFK DAMKYLWMPR LADHHLQQAS  180
TVGDHLVSRL PTGYMESSGM VTSSSDSFAS ESYDGARCAN ASVGEMIHGG DWVQEQNQGF  240
WPEPNQTFQL QDSELSGWVQ GFSESESLAE NFWSLEDIWK MQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-254214524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6821.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605510.0AK360551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120I18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162380.11e-178myb-related protein 340-like
SwissprotQ2QZJ81e-105JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLF2D9I90.0F2D9I9_HORVV; Predicted protein
STRINGMLOC_6821.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-76myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]