PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_6821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 8848.61 Da PI: 4.5516 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.7e-10 | 45 | 76 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT eEd+ lv++++ +G g+W++ ar g MLOC_6821.1 45 RGPWTVEEDLTLVNYIADHGDGRWNSLARGAG 76 89***************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-10 | 40 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.596 | 40 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.72E-7 | 42 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-8 | 45 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.71E-7 | 47 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MASWSSSSTQ RRSGVSSGAT MPCSVMKFDD DLLRHEEEAA EEIRRGPWTV EEDLTLVNYI 60 ADHGDGRWNS LARGAGTSTS S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_6821.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360551 | 1e-124 | AK360551.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120I18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162380.1 | 2e-28 | myb-related protein 340-like | ||||
Swissprot | Q2QZJ8 | 3e-15 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A287QME0 | 1e-48 | A0A287QME0_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287QMY5 | 9e-49 | A0A287QMY5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_6821.2 | 2e-47 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 7e-15 | myb domain protein 78 |
Publications ? help Back to Top | |||
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