PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68151.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 600aa    MW: 67513.1 Da    PI: 8.8295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68151.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15311081396
                   TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
            B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                   ++ +++pkkf++++ggk   s+t+ le+ +g+ + +++  +k+ g + l+ GW+ F ++++++e+D+++F+++++s+fe  v v
  MLOC_68151.1  31 RHGMIIPKKFIDNFGGK--ISRTIELESYNGNMYVFEV--SKHMGNIALRHGWQAFIDEHHIQENDSLLFRHIEKSRFE--VLV 108
                   567********999998..888****************..********************************9989995..444 PP
2B353.15.9e-17279379197
                   EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE. CS
            B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..gr.sefe 91 
                   f+ v++ps+v ++ + lv+pk +a+eh    ++s+t++le   ++++W  ++ +rk + + ++ ++GW +Fv+  ++++gD++vF+++  g+ ++f+
  MLOC_68151.1 279 FVAVMKPSYVKSQtSALVIPKGYADEHFP--PKSQTVVLECpGKSEKWHPRFHIRKDKHGaILCGSGWLDFVRKSRVQVGDICVFERMkkGTgRKFS 373
                   788999****999888***********84..47889*****5566*******876666656999**********************76345556666 PP

                   .EEEEE CS
            B3  92 lvvkvf 97 
                   l+v+v+
  MLOC_68151.1 374 LRVHVL 379
                   677666 PP
3B345.71.2e-14501595598
                   -..-HHHHTT-E..E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
            B3   5 ltpsdvlksgrl..vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                   + +s+v+++++    + +++a+e+   +++++t+tl + ++++sWev++ + + +g+ vl++ W +F+  n+L+++D+++F+l+ + ++ +++v ++
  MLOC_68151.1 501 MNKSSVGNNSMYsvNICREYADEYL--PAGEQTVTLVTaQRSKSWEVEV-HPRDGGAKVLRGDWHKFACHNHLQVKDICLFQLMTDqRKLTMMVDII 594
                   5567777775332267788888773..445668888886888*******.55555669**************************8889999999997 PP

                   - CS
            B3  98 r 98 
                    
  MLOC_68151.1 595 H 595
                   6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.2E-918112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-1818113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2018116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.57519112IPR003340B3 DNA binding domain
CDDcd100178.05E-1620110No hitNo description
PfamPF023621.1E-1331108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-19275375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-23276382IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-18277379No hitNo description
SMARTSM010191.3E-10279382IPR003340B3 DNA binding domain
PfamPF023623.9E-15279378IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237280382IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.0E-19489596IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-16490595IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-12495594No hitNo description
SMARTSM010190.0018497597IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236499597IPR003340B3 DNA binding domain
PfamPF023624.1E-13499596IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MERPCDCCKR YADHLDEKMK CFRRHMGADF RHGMIIPKKF IDNFGGKISR TIELESYNGN  60
MYVFEVSKHM GNIALRHGWQ AFIDEHHIQE NDSLLFRHIE KSRFEVLVLD SDDCEKVFFC  120
PGINIASNAE ERGVHSVDIS NGSRGNATRS PGSKRFATCG RRNSSHPRKV AKTVINYSSP  180
ENSGEDTENE NTDTIYSSSE DSGEDTEPAN TDIEYSSSRD SEEGTEDIPL EYKSSFELDD  240
GHPPSGHDYV LARGSTLSSV QDEKVTTLIQ DVGAEIPAFV AVMKPSYVKS QTSALVIPKG  300
YADEHFPPKS QTVVLECPGK SEKWHPRFHI RKDKHGAILC GSGWLDFVRK SRVQVGDICV  360
FERMKKGTGR KFSLRVHVLH KSMLHSGGSG TGPKRVSLTH GKTMVNSGTP KRVRTTNGRT  420
RAKATSTTCV RKEPGGDAPY SVHSHGHEAR QGPVDSDKSR RPRKRPYIIS STACLTREQK  480
MNVDKRVRAL QSKVPIYVSI MNKSSVGNNS MYSVNICREY ADEYLPAGEQ TVTLVTAQRS  540
KSWEVEVHPR DGGAKVLRGD WHKFACHNHL QVKDICLFQL MTDQRKLTMM VDIIHHNEKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189914.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLA0A287DXI10.0A0A287DXI1_HORVV; Uncharacterized protein
STRINGMLOC_68151.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-13B3 family protein