PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67958.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 174aa MW: 19069.5 Da PI: 10.3248 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.6e-09 | 141 | 174 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 r +W++eE + l + ++++G ++W t+a+ ++ gR MLOC_67958.2 141 RVKWSEEENKMLTQMINKHGLKNWQTVAHAIP-GR 174 789*****************************.98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.553 | 136 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-7 | 139 | 174 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.9E-9 | 141 | 174 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-7 | 141 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.17E-8 | 143 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSFFRSRPPL LLVLVASDSV RPTPTRRISS CSVLSSGSSI AGSSAGQNPN PAATAFNRCF 60 WRTWVFFPAM SRIGDSMPRE RSVNSTSHSR KADANVSGTP HDTAKHCHGE ELGNIGGQLC 120 KNDGHSFKES CSITNSEVLT RVKWSEEENK MLTQMINKHG LKNWQTVAHA IPGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67958.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC311227 | 0.0 | KC311227.1 Hordeum vulgare R2R3-type Myb transcription factor (Myb6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172077.1 | 2e-65 | transcriptional activator Myb-like | ||||
Refseq | XP_020172078.1 | 2e-65 | transcriptional activator Myb-like | ||||
Refseq | XP_020172079.1 | 2e-65 | transcriptional activator Myb-like | ||||
Refseq | XP_020172080.1 | 2e-65 | transcriptional activator Myb-like | ||||
Refseq | XP_020172082.1 | 2e-65 | transcriptional activator Myb-like | ||||
TrEMBL | A0A287U2C4 | 1e-123 | A0A287U2C4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67958.1 | 2e-85 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-07 | myb domain protein 98 |