PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 174aa MW: 19854.6 Da PI: 11.2761 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.7e-13 | 133 | 174 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 r +W++eE + l + ++++G ++W t+a+ ++ gR++ qc+ r MLOC_67958.1 133 RVKWSEEENKMLTQMINKHGLKNWQTVAHAIP-GRSAPQCRQR 174 789*****************************.********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.165 | 128 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-12 | 130 | 174 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 131 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-5 | 132 | 174 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-11 | 133 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.05E-12 | 135 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MHVFLPIPST SSPRARRQRQ RASHSHPTHL FLLGPLLRIL HRGELRSFNR CFWRTWVFFP 60 AMSRIGDSMP RERSVNSTSH SRKADANVSG TPHDTAKHCH GEELGNIGGQ LCKNDGHSFK 120 ESCSITNSEV LTRVKWSEEE NKMLTQMINK HGLKNWQTVA HAIPGRSAPQ CRQR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67958.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC311227 | 0.0 | KC311227.1 Hordeum vulgare R2R3-type Myb transcription factor (Myb6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172077.1 | 2e-71 | transcriptional activator Myb-like | ||||
Refseq | XP_020172078.1 | 2e-71 | transcriptional activator Myb-like | ||||
Refseq | XP_020172079.1 | 2e-71 | transcriptional activator Myb-like | ||||
Refseq | XP_020172080.1 | 2e-71 | transcriptional activator Myb-like | ||||
Refseq | XP_020172082.1 | 2e-71 | transcriptional activator Myb-like | ||||
TrEMBL | A0A287U2A4 | 1e-125 | A0A287U2A4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67958.1 | 1e-127 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14263 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-09 | myb domain protein 3r-4 |