PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67874.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11096.8 Da PI: 8.4927 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.8e-09 | 67 | 102 | 2 | 39 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 g +T eEd +++ + qlG++ W++Ia+ + +Rt+++ MLOC_67874.2 67 GGFTDEEDAIIYSLYSQLGSK-WSLIASQLE-RRTDND 102 569******************.*********.****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.82E-17 | 46 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-12 | 46 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.077 | 47 | 60 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 16.75 | 61 | 102 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-7 | 67 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.42E-6 | 69 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-11 | 73 | 102 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MATPAAGSPS PPKPVSSLAR SLPLPCPAVP LVVLDVSPSC VCVGLKRCGK SCRLRWLNYL 60 RPDIRHGGFT DEEDAIIYSL YSQLGSKWSL IASQLERRTD ND |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67874.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376409 | 7e-94 | AK376409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171470.1 | 2e-36 | transcription factor RAX2-like | ||||
Swissprot | Q9FKL2 | 1e-28 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A287KC43 | 1e-67 | A0A287KC43_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67874.1 | 2e-36 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 3e-30 | myb domain protein 87 |
Publications ? help Back to Top | |||
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