PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67874.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 28566.7 Da PI: 6.3903 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ l d+ +++G+ +W t +++ g++R++k+c++rw++yl MLOC_67874.1 14 RGPWSPEEDDALRDYMQRHGNTgSWITLPAKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.6 | 6.6e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd +++ + qlG++ W++Ia+ + +Rt++++k++w++ MLOC_67874.1 69 GGFTDEEDAIIYSLYSQLGSK-WSLIASQLE-RRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.037 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.19E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.376 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 70 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MGRAPCCDRA AVNRGPWSPE EDDALRDYMQ RHGNTGSWIT LPAKAGLKRC GKSCRLRWLN 60 YLRPDIRHGG FTDEEDAIIY SLYSQLGSKW SLIASQLERR TDNDVKNHWN TKLKKRLVAA 120 AAAFPAAPSS RRPPSFTPAA AHAHAHPSPL LPLPAPTVKA ETYTYDDFLA PTAGLHDPFA 180 ADGSSSASAA VQDPFATEGS SSASAAVQDA FVGEGSTSAS AASSGSNWSA VDNAGGFFVD 240 FCAAGADLAV ADQFLGGFYY PLDPTLSLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67874.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376409 | 0.0 | AK376409.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123B18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171470.1 | 1e-128 | transcription factor RAX2-like | ||||
TrEMBL | M0YCE6 | 0.0 | M0YCE6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67874.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 4e-64 | MYB family protein |