PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6786.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 270aa    MW: 30175.5 Da    PI: 6.6052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6786.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.5e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+ll+ +v+q G g+W+++a+  g++R++k+c++rw +yl
      MLOC_6786.1 15 KGPWTAQEDKLLLGYVRQQGEGRWNSVAKLTGLKRSGKSCRLRWVNYL 62
                     79********************************************97 PP
2Myb_DNA-binding51.62.2e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T++E+  ++++++++G++ W+tIar ++ gRt++++k++w+++
      MLOC_6786.1  68 RGKITPQEENVILELHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112
                      8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1751062IPR017930Myb domain
SuperFamilySSF466892.66E-2913109IPR009057Homeodomain-like
SMARTSM007171.1E-131464IPR001005SANT/Myb domain
PfamPF002497.3E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-231669IPR009057Homeodomain-like
CDDcd001672.86E-101762No hitNo description
PROSITE profilePS5129425.50563117IPR017930Myb domain
SMARTSM007172.4E-1567115IPR001005SANT/Myb domain
PfamPF002492.8E-1468112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2470115IPR009057Homeodomain-like
CDDcd001671.39E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEQLGWGREE GGWRKGPWTA QEDKLLLGYV RQQGEGRWNS VAKLTGLKRS GKSCRLRWVN  60
YLRPDLKRGK ITPQEENVIL ELHALWGNRW STIARSLPGR TDNEIKNYWR THFKKGKPSS  120
KNIERARARF LKQRREIMQG QHEHQHQRGV QDDDGAASAD NTGGGAASHH ADEATTRPAP  180
PPAKDDDLAM MQDMADIDDF LQYHHPMSAY FLLDGGTSDA GSSEEINTCG ATWGSLWNLD  240
DVDVVDDVGG GGACGWGSFA LLQDQGLAFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25151157106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6786.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992831e-131AK099283.1 Oryza sativa Japonica Group cDNA clone:J023132O17, full insert sequence.
GenBankAK1118071e-131AK111807.1 Oryza sativa Japonica Group cDNA clone:J013104N22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172671.11e-163transcription factor MYB57-like
TrEMBLM0YCE00.0M0YCE0_HORVV; Uncharacterized protein
STRINGMLOC_6786.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-65myb domain protein 79