PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67802.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 772aa MW: 87964.1 Da PI: 7.6713

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67802.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.6	6.4e-16	166	247	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+++A +GF r+ +++k+ +k ++ C+++gk ++ ++ +++r+ ++ +C+ak+ vk++ +++we t +++eHnH+l+p MLOC_67802.4 166 RFYSTHALLTGFAARRGTNYKR------KKFHLLCNRSGKLKPAQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHPLCP 247 5******************9......4678*******9988..88888889999******9.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-13	166	247	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.8E-28	370	462	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.741	652	688	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence Send to blast
MQAAGDLGGP VPATNFEQVV MMTYPDRAVE PSHPGAAGLR VEKEHVGEQA NPEGGLQPIG 60 QINQENASNG IGTTVQGLLA DMLHKQTNSA DPAVQSAEGQ DQLLGVTEGH DLSSNDTSSG 120 SDSGSSSGSE LDTELGKCFY PSIEALENSR PPEVGMKFPT LEDAERFYST HALLTGFAAR 180 RGTNYKRKKF HLLCNRSGKL KPAQDLQRKR KVNVLGSQCQ AKVIVKLHNE QWEFTGVKHE 240 HNHPLCPSPS LTSFFLDHKY LSSEEKLFLR VLQQSRVNPR KAMNIFQRMR SNFGNVSSSK 300 EKDTSNSQCV DQWRKENSDV ETALKRFKEL ELRNLGFSYT MQKDEDNIVR SLFWTDARSK 360 LDYEIFGDFI SFSTTYSTNR HNMPFTPIIG MNNHGRILVF GCALLQDQKA ETFKWMFQTF 420 LHVMGGKLPK TIIIDQDEGM VKAIAEVMPQ VRPRLCKFSV MRKAQEMLGA FMAARGNMNA 480 ELHGLVDNSL TEKEFEEGWA VLIERYDASE NEYLRLMWKI RKRWVPIYFQ ADFYPFVESA 540 GHVERTNLLF KDNVLLQDSV EKFIEQYERI QESIVKTEEE DTLQPATEPA YFSMQPIERH 600 AARIYTRQIF LRVQKELYCS TALNAYEIRG GSAYRLEKVF NYKNPEFDRN SFEVLAEPGT 660 HVFKCQCAKF TRDGFLCCHI FRVFTQLGVT EIPAQYIVPR WAREFREERL KEHEKKCSKR 720 AENKMRCAML LGKMAGIGKG ICMDGAKCGG FMLELDKVQE RLATTTEVNP RK

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence Send to blast

MQAAGDLGGP VPATNFEQVV MMTYPDRAVE PSHPGAAGLR VEKEHVGEQA NPEGGLQPIG  60
QINQENASNG IGTTVQGLLA DMLHKQTNSA DPAVQSAEGQ DQLLGVTEGH DLSSNDTSSG  120
SDSGSSSGSE LDTELGKCFY PSIEALENSR PPEVGMKFPT LEDAERFYST HALLTGFAAR  180
RGTNYKRKKF HLLCNRSGKL KPAQDLQRKR KVNVLGSQCQ AKVIVKLHNE QWEFTGVKHE  240
HNHPLCPSPS LTSFFLDHKY LSSEEKLFLR VLQQSRVNPR KAMNIFQRMR SNFGNVSSSK  300
EKDTSNSQCV DQWRKENSDV ETALKRFKEL ELRNLGFSYT MQKDEDNIVR SLFWTDARSK  360
LDYEIFGDFI SFSTTYSTNR HNMPFTPIIG MNNHGRILVF GCALLQDQKA ETFKWMFQTF  420
LHVMGGKLPK TIIIDQDEGM VKAIAEVMPQ VRPRLCKFSV MRKAQEMLGA FMAARGNMNA  480
ELHGLVDNSL TEKEFEEGWA VLIERYDASE NEYLRLMWKI RKRWVPIYFQ ADFYPFVESA  540
GHVERTNLLF KDNVLLQDSV EKFIEQYERI QESIVKTEEE DTLQPATEPA YFSMQPIERH  600
AARIYTRQIF LRVQKELYCS TALNAYEIRG GSAYRLEKVF NYKNPEFDRN SFEVLAEPGT  660
HVFKCQCAKF TRDGFLCCHI FRVFTQLGVT EIPAQYIVPR WAREFREERL KEHEKKCSKR  720
AENKMRCAML LGKMAGIGKG ICMDGAKCGG FMLELDKVQE RLATTTEVNP RK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67802.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178460.1	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	A0A287GCG7	0.0	A0A287GCG7_HORVV; Uncharacterized protein
STRING	MLOC_67802.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-76	FAR1-related sequence 5