PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67802.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

FAR1

Protein Properties

Length: 752aa MW: 85980.9 Da PI: 7.9246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67802.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.6	6.2e-16	146	227	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+++A +GF r+ +++k+ +k ++ C+++gk ++ ++ +++r+ ++ +C+ak+ vk++ +++we t +++eHnH+l+p MLOC_67802.3 146 RFYSTHALLTGFAARRGTNYKR------KKFHLLCNRSGKLKPAQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHPLCP 227 5******************9......4678*******9988..88888889999******9.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-13	146	227	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.5E-28	350	442	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.741	632	668	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MMTYPDRAVE PSHPGAAGLR VEKEHVGEQA NPEGGLQPIG QINQENASNG IGTTVQGLLA 60 DMLHKQTNSA DPAVQSAEGQ DQLLGVTEGH DLSSNDTSSG SDSGSSSGSE LDTELGKCFY 120 PSIEALENSR PPEVGMKFPT LEDAERFYST HALLTGFAAR RGTNYKRKKF HLLCNRSGKL 180 KPAQDLQRKR KVNVLGSQCQ AKVIVKLHNE QWEFTGVKHE HNHPLCPSPS LTSFFLDHKY 240 LSSEEKLFLR VLQQSRVNPR KAMNIFQRMR SNFGNVSSSK EKDTSNSQCV DQWRKENSDV 300 ETALKRFKEL ELRNLGFSYT MQKDEDNIVR SLFWTDARSK LDYEIFGDFI SFSTTYSTNR 360 HNMPFTPIIG MNNHGRILVF GCALLQDQKA ETFKWMFQTF LHVMGGKLPK TIIIDQDEGM 420 VKAIAEVMPQ VRPRLCKFSV MRKAQEMLGA FMAARGNMNA ELHGLVDNSL TEKEFEEGWA 480 VLIERYDASE NEYLRLMWKI RKRWVPIYFQ ADFYPFVESA GHVERTNLLF KDNVLLQDSV 540 EKFIEQYERI QESIVKTEEE DTLQPATEPA YFSMQPIERH AARIYTRQIF LRVQKELYCS 600 TALNAYEIRG GSAYRLEKVF NYKNPEFDRN SFEVLAEPGT HVFKCQCAKF TRDGFLCCHI 660 FRVFTQLGVT EIPAQYIVPR WAREFREERL KEHEKKCSKR AENKMRCAML LGKMAGIGKG 720 ICMDGAKCGG FMLELDKVQE RLATTTEVNP RK

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MMTYPDRAVE PSHPGAAGLR VEKEHVGEQA NPEGGLQPIG QINQENASNG IGTTVQGLLA  60
DMLHKQTNSA DPAVQSAEGQ DQLLGVTEGH DLSSNDTSSG SDSGSSSGSE LDTELGKCFY  120
PSIEALENSR PPEVGMKFPT LEDAERFYST HALLTGFAAR RGTNYKRKKF HLLCNRSGKL  180
KPAQDLQRKR KVNVLGSQCQ AKVIVKLHNE QWEFTGVKHE HNHPLCPSPS LTSFFLDHKY  240
LSSEEKLFLR VLQQSRVNPR KAMNIFQRMR SNFGNVSSSK EKDTSNSQCV DQWRKENSDV  300
ETALKRFKEL ELRNLGFSYT MQKDEDNIVR SLFWTDARSK LDYEIFGDFI SFSTTYSTNR  360
HNMPFTPIIG MNNHGRILVF GCALLQDQKA ETFKWMFQTF LHVMGGKLPK TIIIDQDEGM  420
VKAIAEVMPQ VRPRLCKFSV MRKAQEMLGA FMAARGNMNA ELHGLVDNSL TEKEFEEGWA  480
VLIERYDASE NEYLRLMWKI RKRWVPIYFQ ADFYPFVESA GHVERTNLLF KDNVLLQDSV  540
EKFIEQYERI QESIVKTEEE DTLQPATEPA YFSMQPIERH AARIYTRQIF LRVQKELYCS  600
TALNAYEIRG GSAYRLEKVF NYKNPEFDRN SFEVLAEPGT HVFKCQCAKF TRDGFLCCHI  660
FRVFTQLGVT EIPAQYIVPR WAREFREERL KEHEKKCSKR AENKMRCAML LGKMAGIGKG  720
ICMDGAKCGG FMLELDKVQE RLATTTEVNP RK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67802.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020178460.1	0.0	protein FAR1-RELATED SEQUENCE 9-like
TrEMBL	A0A287GCI8	0.0	A0A287GCI8_HORVV; Uncharacterized protein
STRING	MLOC_67802.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-76	FAR1-related sequence 5